Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0113 |
Symbol | |
ID | 5867801 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 116160 |
End bp | 117218 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641545186 |
Product | radical SAM domain-containing protein |
Protein accession | YP_001666365 |
Protein GI | 167031134 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1533] DNA repair photolyase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.000412834 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATCCTC CAGCACCACT AAAGGGCCGT GGCACGGCAC ACAATCCGCA CAACCGTTTT GCCCCCAGCC ATTCGCTGGT AGAGGACGAC GGCTGGTATC AGGAAGTGCC GCAGACCCAA GGCACCGAGG TGCGTAGCGA AACGGCGAAA TCGGTCATCA CCCGCAACAC CTCCCCCGAC CTGCCCTTCG ACCGCTCCAT CAACCCTTAC CGCGGCTGCG AGCATGGCTG CATCTACTGC TATGCCCGCC CCTCCCATGC CTATTGGGAC CTCTCCCCCG GCTTGGACTT CGAAACCAAG CTGATCGCCA AGACCAACGC CGCCGAAGTG CTCGCGCAAC AGCTGAGCAA ACCGGGTTAC GTGTGCGCGC CAATCAATCT GGGTTCCAAT ACCGACCCGT ACCAGCCGAT CGAGCGGGAA CAGATGCTGA CCCGGCGTCT GCTGGAAGTG TTGCTGCGTT TTCGTCACCC GGTGACCATC GTGACCAAGG GCTCGCTGGT GTTGCGTGAC CTCGATCTGC TGGCAGAGAT GGCCCGCCAG CGCCTGGCAC GGGTAATGAT CAGCCTGACC ACACTGGACG ACGATCTCAA GCGGGTGCTG GAGCCACGGG CGGCGTCACC CAATGCCCGG TTGAGGGCCA TCCGCGTGTT GCGCGAGGCG GGTGTGCCGG TAGGTGTGTT GTGTTCGCCG ATGATTCCGA TGATCAACGA CAGTGAGCTG GAGCGCTTGC TGGAGGCTGC CAAGGACGCT GGCGCACAGA GTGCGGCCTA CATGATGTTG CGCCTGCCGC TGGAAGTGGC GCCGTTGTTC GAGCAATGGC TGCAGGACCA TTACCCGCAG CGGGCGGCGC ATGTATTGAG CCTGATCCGC CAGAGCCGGG GGGGCGAGCT GTATGACAGC CGGTTTGGCA CGCGCATGCG TGGCGAGGGT GTGTTTGCCG AGCTGCTGGG GCAGCGTTTT GCCAAGGCCA TGAAGCGGCT GGAATTCGAA GGCCGGGAAG CGCAGGGGCT GGATTGCTCG GCCTTCTGTC CGCCGGGTGG GCAGATGGCC CTGTTCTGA
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Protein sequence | MNPPAPLKGR GTAHNPHNRF APSHSLVEDD GWYQEVPQTQ GTEVRSETAK SVITRNTSPD LPFDRSINPY RGCEHGCIYC YARPSHAYWD LSPGLDFETK LIAKTNAAEV LAQQLSKPGY VCAPINLGSN TDPYQPIERE QMLTRRLLEV LLRFRHPVTI VTKGSLVLRD LDLLAEMARQ RLARVMISLT TLDDDLKRVL EPRAASPNAR LRAIRVLREA GVPVGVLCSP MIPMINDSEL ERLLEAAKDA GAQSAAYMML RLPLEVAPLF EQWLQDHYPQ RAAHVLSLIR QSRGGELYDS RFGTRMRGEG VFAELLGQRF AKAMKRLEFE GREAQGLDCS AFCPPGGQMA LF
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