Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0111 |
Symbol | |
ID | 5867799 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 113714 |
End bp | 115801 |
Gene Length | 2088 bp |
Protein Length | 695 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641545184 |
Product | oligopeptidase A |
Protein accession | YP_001666363 |
Protein GI | 167031132 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0339] Zn-dependent oligopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.000602107 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGGCAGT GTTTCTTCTG CCAAGGTATC CAAACCGTGA CTGCGAACAA CCCGCTTCTG CAATCCCACG ATCTGCCGCC CTTCTCGCAA ATTCGTGCCG AACACGTGTT GCCGGCGATC GAAGCGATCC TGGCCGACAA CCGTAAAGCC ATTGCCGAGA TCCTCGAAAA GCAGGGCAAG AACCCCACCT GGGCCGGCCT GGTGCTGGCC ATGGACGAAC TGAACGACCG CCTGGGCGCC GCCTGGAGCC CGGTCAGCCA CCTTAACGCG GTGTGCAACA GCGCGGAGCT GCGCGAGGCC TACGAGTCAT GCCTGCCGGC GTTGAGCGCC TACTCTACCG AACTGGGCCA GAACCGTGCG CTGTTCGAAG CCTACCAGGC ACTGATCGAC AGCCCGGAGG CCGCCGGCTT CGACGTGGCG CAAAAGACTA TCCTCGAGCA TGCCCTGCGT GACTTCCGCC TGTCGGGTAT CGACCTGCCG GCGGACAAGC AGCAGCGCTA CGCCGAAGTG CAGAGCAAAC TCAGCGAGCT GGGCAGCCGC TTCTCCAACC AGCTGCTCGA TGCCACCCAG GCCTGGACCA AGCACGTTAC CGATGAAGCC GCACTGGCCG GCCTGACCGA CTCGGCCAAG GCGCAGATGG CCGCCGCTGC CCAAGCCAAG GGCCTCGACG GATGGCTGAT CACGTTGGAG TTCCCCAGCT ACTACGCGGT GATGACCTAC GCCAGCGACC GCGCCCTGCG CGAAGAGCTA TACGCCGCTT ACTGCACCCG CGCCTCGGAC CAGGGCCCGA ATGCCGGCCA GTTCGACAAC GGTCCGGTGA TGGGCGAAAT CCTCGATCTG CGTCAGGAAC TGGCCGAGCT GCTTGGCTAC AAGAACTACG CCGAGCTGAG CCTGGCCACC AAGATGGCCG AGTCCAGCGA CCAGGTGCTG AGCTTCCTGC GAGACCTGGC CAAGCGCTCC AAGCCGTTCG CCGCCCAGGA CCTGCAACAG CTCAAGGCCT ACGCCGCCGA ACAAGGCTGC CCTGAACTGG CCAGCTGGGA CACTGGCTAC TTTGGCGAGA AGCTGCGCGA GCAGCGCTAC AGCGTGTCGC AGGAAGCCCT GCGTGCCTAT TTCCCGATCG ACAAGGTGCT GGGCGGTCTG TTCAGCATCG TGCAGCGCCT GTACGGCATC GAAATCGCCG AACTCAAGGG CTTCGACAGC TGGCACCCAG ACGTACGCTT GTTCGAGATC AAGGAAAACG GCCAGCACGT CGGCCGCTTC TTCTTCGACC TGTACGCCCG CGCCAACAAG CGTGGTGGCG CCTGGATGGA TGGCGCCCGT GACCGTCGCC GCACGGCCGG CGGCCAGCTG CAGAGCCCGG TGGCCAACCT GGTGTGCAAC TTCACCCCGG CTGCACCCGG CAAGCCGGCG CTGCTGACCC ACGATGAAGT AACCACCCTG TTCCACGAGT TCGGCCACGG CCTGCACCAC ATGTTGACCC GCATCGAACA CGCCGGGGTT TCCGGCATCA ATGGCGTGGC CTGGGATGCG GTCGAACTGC CGAGCCAGTT CATGGAAAAC TGGTGCTGGG AGCCGGAAGG CCTGGCACTG ATCTCCGGGC ACTACGAAAC GGGTGCTGCC CTGCCCCAGG ACCTGCTGGA CAAGATGCTG GCGGCTAAAA ACTTCCAGTC GGGCATGATG ATGGTGCGCC AGCTGGAGTT TTCGCTGTTC GACTTCGAAC TGCACGCCAG CCATGGCGAC GGTCGCAGCG TGCTGCAGGT GCTCGAAGGC GTGCGCGACG AGGTATCGGT CATGCGCCCA CCGGCGTATA ACCGCTTCCC CAACAGCTTT GCGCATATTT TTGCGGGCGG TTACGCAGCG GGCTACTACA GCTACAAGTG GGCTGAAGTG CTGTCGGCCG ACGCTTTCTC GCGTTTCGAA GAAGAAGGTG TTCTCAATGC CGAGACTGGC CGCGCCTTCC GCGAGGCGAT CCTGGCCCGT GGTGGGTCGC GCGAGCCGAT GGAGCTGTTC GTCGACTTCC GTGGCCGTGA GCCTTCCATC GATGCATTGC TGCGCCACAG TGGCCTCACC GAGGACGCTG CGGCATGA
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Protein sequence | MGQCFFCQGI QTVTANNPLL QSHDLPPFSQ IRAEHVLPAI EAILADNRKA IAEILEKQGK NPTWAGLVLA MDELNDRLGA AWSPVSHLNA VCNSAELREA YESCLPALSA YSTELGQNRA LFEAYQALID SPEAAGFDVA QKTILEHALR DFRLSGIDLP ADKQQRYAEV QSKLSELGSR FSNQLLDATQ AWTKHVTDEA ALAGLTDSAK AQMAAAAQAK GLDGWLITLE FPSYYAVMTY ASDRALREEL YAAYCTRASD QGPNAGQFDN GPVMGEILDL RQELAELLGY KNYAELSLAT KMAESSDQVL SFLRDLAKRS KPFAAQDLQQ LKAYAAEQGC PELASWDTGY FGEKLREQRY SVSQEALRAY FPIDKVLGGL FSIVQRLYGI EIAELKGFDS WHPDVRLFEI KENGQHVGRF FFDLYARANK RGGAWMDGAR DRRRTAGGQL QSPVANLVCN FTPAAPGKPA LLTHDEVTTL FHEFGHGLHH MLTRIEHAGV SGINGVAWDA VELPSQFMEN WCWEPEGLAL ISGHYETGAA LPQDLLDKML AAKNFQSGMM MVRQLEFSLF DFELHASHGD GRSVLQVLEG VRDEVSVMRP PAYNRFPNSF AHIFAGGYAA GYYSYKWAEV LSADAFSRFE EEGVLNAETG RAFREAILAR GGSREPMELF VDFRGREPSI DALLRHSGLT EDAAA
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