Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0094 |
Symbol | |
ID | 5867782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 102276 |
End bp | 103175 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641545167 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001666346 |
Protein GI | 167031115 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | [TIGR03418] putative choline sulfate-utilization transcription factor |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0000000160709 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTTGACC ACCTCGCCGA GTTGTCGCTG GATACCTTGC GTGTATTCGA AGCCGCAGCA CGCCTGCGGG GCTTTACCGC TGCGGCGCTG GCGCTGGGTA CCACGCAGCC GGCCGTGAGC CAGCAGGTTA AGCGCCTGGA AGCACAGCTG GGCACGCGCC TGTTCGATCG CATTTACCGG GGCATCGAGT TGACCGAGGC CGGCCAGGTG TTGTTCCAGC AGGTGCACCA GGGCCTGCAG GCGATGGATG ACGGCATTGC CCAAGCCACC GGTCGCGGCC AGCGCGAGGT GCTGCAGGTG GCCACCGACT TTGCTTTTGC GGCGTTCTGG CTGATGCCAA GGCTGCAGCG CTTTCATGAG GCTTATCCAC AGGTGGATGT GAGCCTGGTC ACCGGTGAAC GCAGCCAGGG GATGCTGCGC CCGGACATCG ATGTGGCGGT GCTTTTCGGT GATGGGCGCT TTCACCAGGG CGAAAGCCGC TGGCTGTTCG ATGAGGAAGT TTTCCCGGTG TGCAGCCCCC GGCTGACGGA TGGCAAACCC TTGTCAGCCG TGGCTTTGCA ACGATTGCCC TTGCTGCATT TGAAGGGCGA GCAAGCCAGC CGCTGGTTTG ACTGGGCGGG GGTGTTTCGC GGGTTTGGTG TGGCCAGCCC GCCGGCGGCG GGGCAGTTGC GTTTCGACAA CTACACGTTG CTGATTCAGG CAGCGATTGC TGGCCAGGGC GTGGCGATTG GGTGGGGGCA CTTGGTGGAT AAGTTGGTGG AGCAAGGGTT GCTTTGCCGG CCTTTGGAGG GGAGTTTGCG CTCGGAGCGT GGGTATTATG CGGTTCTGCC ACCGCGCAAG CGGCGTGGGG CGCTGATCGA GCGGTTTGTC GGTTGGCTGG AGCATGAGCG CAGCCTTTGA
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Protein sequence | MFDHLAELSL DTLRVFEAAA RLRGFTAAAL ALGTTQPAVS QQVKRLEAQL GTRLFDRIYR GIELTEAGQV LFQQVHQGLQ AMDDGIAQAT GRGQREVLQV ATDFAFAAFW LMPRLQRFHE AYPQVDVSLV TGERSQGMLR PDIDVAVLFG DGRFHQGESR WLFDEEVFPV CSPRLTDGKP LSAVALQRLP LLHLKGEQAS RWFDWAGVFR GFGVASPPAA GQLRFDNYTL LIQAAIAGQG VAIGWGHLVD KLVEQGLLCR PLEGSLRSER GYYAVLPPRK RRGALIERFV GWLEHERSL
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