Gene PputGB1_0084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_0084 
Symboldef 
ID5867772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp91250 
End bp91756 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content61% 
IMG OID641545157 
Productpeptide deformylase 
Protein accessionYP_001666336 
Protein GI167031105 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0242] N-formylmethionyl-tRNA deformylase 
TIGRFAM ID[TIGR00079] peptide deformylase 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value0.669645 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000000000447721 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGCCATCT TGAACATTCT CGAATTCCCG GACCCGCGCC TGCGCACTAT CGCCAAACCG 
GTGACGGAGT TCGACGACGC CCTGCGTCAG CTGATCGACG ACATGTTTGA AACCATGTAC
GAAGCCCCTG GTATCGGCCT GGCCGCCACC CAGGTCAACG TGCACCTGCA GGTCGTGGTC
ATGGACCTCA GCGAAGACCG CAGCGAGCCG CGCGTCTTCA TCAACCCCAC GGTCGAAGAA
CTCACCCACG ACATGGGCCA GTACCAGGAA GGTTGCCTGT CGGTGCCCGG CTTCTACGAG
AACGTCGACC GCCCGCTGCG TGTGCGGGTC AAGGCCCAGG ACCGCGACGG CAAGCCGTTC
GAGCTGGAAT GCGAAGGCCT GTTGGCGGTG TGCGTGCAGC ACGAATTCGA TCACCTCAAC
GGCAAGCTGT TCGTTGACTA CCTGTCGCAG CTCAAACGCG ACCGGATCAA GAAGAAACTG
GAAAAGCAGC ACCGCCAGCA AGCCTGA
 
Protein sequence
MAILNILEFP DPRLRTIAKP VTEFDDALRQ LIDDMFETMY EAPGIGLAAT QVNVHLQVVV 
MDLSEDRSEP RVFINPTVEE LTHDMGQYQE GCLSVPGFYE NVDRPLRVRV KAQDRDGKPF
ELECEGLLAV CVQHEFDHLN GKLFVDYLSQ LKRDRIKKKL EKQHRQQA