| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0073 |
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| Symbol | |
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| ID | 5867761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 79396 |
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| End bp | 81015 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641545146 |
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| Product | general substrate transporter |
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| Protein accession | YP_001666325 |
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| Protein GI | 167031094 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.229897 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00000000114232 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGGATT ACATCCAAGA GCAGGGTGCG GCGGCCAGCA GCTCCAGCCG CCGTGAAGAG
CGCAAGATCA TTTTCGCGTC ATCCCTTGGG ACGGTTTTCG AGTGGTATGA CTTTTTTCTC
TATGGTGCGC TGGCAGCGGT CATCAGCAAG CAATTCTTCG CTGGTGTGAA CGACACCACC
GCCTTCATCT TCGCCCTGAT GGCCTTTGCT GCGGGCTTTC TGGTACGGCC CTTCGGCGCG
CTGGTGTTCG GCCGCCTGGG TGACATGATC GGGCGCAAGT ACACCTTCCT GGTCACCATC
GTGCTGATGG GCCTGTCCAC TTTCGCGGTG GGGTTGTTGC CTACCTACGC CAGCATTGGC
ATTGCCGCAC CGATCATTCT GGTAATCCTG CGCATGTTGC AGGGGCTGGC GCTGGGCGGC
GAATATGGCG GTGCGGCCAC TTACGTGGCC GAGCATGCGC CCCCCGGCAA GCGTGGCTTG
CACACCGGTT TCATCCAATC CACTGCAACC TTGGGTCTGT TGCTGTCGCT GCTGGTGGTA
CTGGGCAGCC GCTACATCAG TGGTGACCAG TTCGAAACCT GGGGCTGGCG CCTGCCGTTC
CTGCTGTCGA TCGTGCTACT GGCCATTTCC ACCTGGATCC GCATGAGCAT GCACGAATCG
CCTGCGTTCG TGAAAATGAA GGCCCAGGGC AAGATCAGCA AGTCGCCGAT CCGTGAGTCG
TTCACTTCCT GGCCAAACCT GAAAGTGGTG CTCACCGCAC TGTTCAGCAT CAACGCCGGC
CAAGCCGTGA CCTTTTACAC GGCACAGTTC TACGTGCTGT TCTTCATGAC CCAGATGCTG
AAGATGGACC CCGCCCAAGC CAACACCCTG TTGATTATCA GTGTGGTGAT CGGTGCGCCA
TTCTTCGTGT TCTTCGGCTG GCTGTCGGAC CGCATCGGCC GCAAGCCAAT CCTGATGCTC
GGCCTGCTGT TGGCCACGGT GCTGTACTTC CCGCTGTTCA AGGCCCTGAG CCATTACGCC
AACCCACAGA TTGACGCCGC CAGCCGTCAG GCGCCGATCG TGGTTACCGC CGACCCGCAA
AGCTGCACCT TCCAGTTCGA CCCCGTGGGC AAGGCACGTT TCGACAGCCC GTGCGACAAG
GTCAAGACCT TCCTGGTGAA GCAAGGCCTG CCGTACAGCT CGGTAAGCGT GGCCGGTAGC
GATGTGGTGG TGAACATTGG TGAAAAGACC ATCAACGGCT TCGACGAAAC CGCCATGCGC
TCTGCAATCG AGCAGGCGGG CTACCCGGCC AAGGCCGACC CTGAGCAGGT CAACCAGGTG
ATGGTGGTGG TGCTGATCGT GGCGATGATC CTGATCGCGA CCATGACCTA TGGCCCGTTG
GCGGCGGTGA TGGTCGAGCT GTTCCCGACC CGTATCCGCT ACACCTCGAT GTCACTGCCC
TATCACATAG GCAATGGCTG GTTCGGTGGC TTCCTGCCGA CCGTATCGTT CGCGCTGGTG
GTCTATACCG GGGATATCTT CTACGGGCTT TGGTACCCAG TGCTGGTGAC CGGTATCAGT
CTGGTGGTGG GGATCTTCTG CCTGAAAGAA ACCAAGGACG TCGATATCGA CAAAGTCTGA
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| Protein sequence | MSDYIQEQGA AASSSSRREE RKIIFASSLG TVFEWYDFFL YGALAAVISK QFFAGVNDTT
AFIFALMAFA AGFLVRPFGA LVFGRLGDMI GRKYTFLVTI VLMGLSTFAV GLLPTYASIG
IAAPIILVIL RMLQGLALGG EYGGAATYVA EHAPPGKRGL HTGFIQSTAT LGLLLSLLVV
LGSRYISGDQ FETWGWRLPF LLSIVLLAIS TWIRMSMHES PAFVKMKAQG KISKSPIRES
FTSWPNLKVV LTALFSINAG QAVTFYTAQF YVLFFMTQML KMDPAQANTL LIISVVIGAP
FFVFFGWLSD RIGRKPILML GLLLATVLYF PLFKALSHYA NPQIDAASRQ APIVVTADPQ
SCTFQFDPVG KARFDSPCDK VKTFLVKQGL PYSSVSVAGS DVVVNIGEKT INGFDETAMR
SAIEQAGYPA KADPEQVNQV MVVVLIVAMI LIATMTYGPL AAVMVELFPT RIRYTSMSLP
YHIGNGWFGG FLPTVSFALV VYTGDIFYGL WYPVLVTGIS LVVGIFCLKE TKDVDIDKV
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