Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0071 |
Symbol | |
ID | 5867759 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 76586 |
End bp | 77473 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641545144 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001666323 |
Protein GI | 167031092 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000000017949 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTTCGACT GGAACGATCT GCGGTTTTTC CTCGAGTTAC AGCGCAGCGG CCGCCTGCTT ACCGCCGCCA AGCGCCTGAA CACCACCCAC AGCACCGTGG CCCGGCACAT CGAGAGCATC GAGCAGAGCC TGGGCACCGC GCTGTTCGTG CAGCATGCCC AGGGTTACGA GTTAACCCCC TCGGGCCAAG CCTTGCTCAA GCATGCCGAA GCCATGGAGA ACGTCGCCCT GCTGGCGCAG GAAGAAATCA CTCAGGCCAT CACGCCGCTG GGCAAGATTC GCCTGGGGGT GACCGAAGGC ATCGGCATCA TGTTCTTCAC CCCACGCATG AACGCGTTGT TCGAGCGTTA CCCTGGCCTT GAAGTGGAAC TGGTGGCCGT ACCGCGTTTC GTCAGCATCC TCAACCGCGA GGCGGAAATC AGCATCCACC TGGAGCGGCC CAACGCCGAT CTGCTGATCA CTCGCAAACT CACCGATTAT CGCCTGGCGC TGTACGCCAG CCAGGACTAT TTGCACCGCG CGCCACCACT GCGCAACCGC GAAGACCTGG CCCGGCACAG CTGGATCGGC TACGTCGACG ACTTGCTGTT CAGCCAGGAG TTGCTGTTTC TCAACAGCTT CTGCCGGGCA CCCAACGTGG TGTTTCGCAG CACCAGCGTG ATCGCCCAGC AAGCCGCCGC CCGCGCCGGG CTGGGCATCG CCGTGCTGCC CAACTACATG GCTCGCCACG ACCCGACACT GGTACGCGTG CTGCCTGGCG AAACCATCCA GCGCAGTTAC TGGATCTGCA CCCGTCGCGA GCTGCATAAA TCGGTGCGCC TGCGGGTGGT GTGGGACTAT TTGCTGGCGC TGTGCGCGGC GCAGCAGGAT GAGCTGCTAG CCCAATAG
|
Protein sequence | MFDWNDLRFF LELQRSGRLL TAAKRLNTTH STVARHIESI EQSLGTALFV QHAQGYELTP SGQALLKHAE AMENVALLAQ EEITQAITPL GKIRLGVTEG IGIMFFTPRM NALFERYPGL EVELVAVPRF VSILNREAEI SIHLERPNAD LLITRKLTDY RLALYASQDY LHRAPPLRNR EDLARHSWIG YVDDLLFSQE LLFLNSFCRA PNVVFRSTSV IAQQAAARAG LGIAVLPNYM ARHDPTLVRV LPGETIQRSY WICTRRELHK SVRLRVVWDY LLALCAAQQD ELLAQ
|
| |