| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0067 |
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| Symbol | |
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| ID | 5867755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 72074 |
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| End bp | 73366 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641545140 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001666319 |
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| Protein GI | 167031088 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.485042 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00677229 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTGAAG CCCATCCCCT CATCCTAGCT CTGGTTTCCT ACCTTGAGCA CGATGCCCTG
CCGACCATCG TGCTGGACAC CGACTACAAC ATCCTCGCCG CCAATGCGGC CTATCGTCGC
CAGTTCGGCC GGCATGATCA GGCGCCGTTG GGCGAGAAGT GCCACAAGGT CTCGCATCAC
TATGCCGTAC CGTGCGACCA GGCTGGCGAG CATTGCCCGA TGCGCAAGGC GTGGGACAGC
AAGGTACCGG AGCGGGTGTT GCACATTCAT CACACACCAC GCGGCCCCGA GCACGTCGAC
GTCGAGTTGC GGCCAATCCT GGATGAACAG GGCAGGGTGG TGGCCTTTGT CGAACGCCTG
ACCACCATCA CCCTCGCCTC GGCACAGCCC CAGGAGCAAG GTTTGGTCGG CCGCGCGCCA
ACCTTCAAGG CCGCCTTGGC CAGCCTGCAA CGTGCGGCAC CCGCGCAGAT TCCGGTATTG
CTGCAGGGTG AGTCGGGCAC CGGCAAGGAA CTGTTCGCGC GCGCGCTACA CATGGGCAGC
CCACGGGCCA ACGGGCCGCT GGTGGTGGTC GACTGCACTG GTTTGACCGA ATCCTTGTTC
GAAAGTGAGC TGTTCGGTTA CGAGAAAGGT GCGTTCACCG GTGCCCACCA ACGCAAGATC
GGCCTGGCAG AGGCGGCCCA TGGCGGCACC TTGTTTCTCG ACGAAATCGG TGAAGTACCC
CTGGCGATGC AGGTGAAGCT GCTGCGCCTG ATCGAGTCTG GCAGCTTCCG CCCGGTTGGC
AGCTTGCGCA CGGTGCATTC AGATTTCCGC CTGGTATCGG CCACCCACAA GCCGCTCAAG
CAAATGGTCG CGGATGGCAC CTTCCGTGAA GACCTGTATT ACCGTATCAG CGGCTTCCCG
ATTCGCCTGC CTGCGCTGCG CGAGCGGGTG GAAGATCTAC CACTGCTTGC GCAGAGCCTG
CTGCAGCGCA TGGCTGGCAA GCCAACGCCC AGGCTGAGTG ACGATGCCTT GCAGCAACTT
GGGCTGCATC CGTTTCCGGG CAATATCCGA GAGCTGCGCA ACATACTGGA AAGGGCGCGG
CTGTTTGCCG ATGACGGGCT GATCAGGCCT GAGCACTTTC CGGCAGATAT CGGGCCGGCG
GGGGCGATCA CAACGGGTAG CCGTCGCAAT GATTTGGGGG CGTTGGCGCA GGCGTTGGAG
CAGTTCAAGG GTTCGCGTAG CGAACTGGCC AGTCATCTTG GTATGAGTGA ACGCACGCTG
TATCGCCGAC TGAAGGCGCT CGGCTTGAAC TGA
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| Protein sequence | MPEAHPLILA LVSYLEHDAL PTIVLDTDYN ILAANAAYRR QFGRHDQAPL GEKCHKVSHH
YAVPCDQAGE HCPMRKAWDS KVPERVLHIH HTPRGPEHVD VELRPILDEQ GRVVAFVERL
TTITLASAQP QEQGLVGRAP TFKAALASLQ RAAPAQIPVL LQGESGTGKE LFARALHMGS
PRANGPLVVV DCTGLTESLF ESELFGYEKG AFTGAHQRKI GLAEAAHGGT LFLDEIGEVP
LAMQVKLLRL IESGSFRPVG SLRTVHSDFR LVSATHKPLK QMVADGTFRE DLYYRISGFP
IRLPALRERV EDLPLLAQSL LQRMAGKPTP RLSDDALQQL GLHPFPGNIR ELRNILERAR
LFADDGLIRP EHFPADIGPA GAITTGSRRN DLGALAQALE QFKGSRSELA SHLGMSERTL
YRRLKALGLN
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