Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0060 |
Symbol | |
ID | 5867748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 65151 |
End bp | 66494 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641545133 |
Product | outer membrane porin |
Protein accession | YP_001666312 |
Protein GI | 167031081 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.203485 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAATCA AAGTACCACT GTATTTGGCG GCAGTTTCTG CGCTGTCTGG AAGCTATGCT ATTTCGGCAC AAGCTGAAGA CAAGCCAGAA GGCTTCATTG AAGGCAGCAG CCTTACAGTG TTGAACCGTA ACTTCTACTT CAACCGTGAT AACCGCGACA GCACCGCCCC CACTTACAAC AGTGGCAAGG GCAATACGAA CGGCTACTCC GAAGCCTGGG CGCACGCGAT CATCAGCAAA TTCAACTCCG GGTTTACCCA AGGTACCGTT GGCTTTGGCG TTGATGCCTT TGCCATGATC GGCCTCAAGC TCGACACCGG TGATGGGCGC AACGGCGGCC GTAGCTCCTT CGACGTGCTG CCCGTTGATA ACAAGGGTGA AGCTCGCGAC GAATACACCA AGGTCGGCGG CGCAGCCAAA GTCCGCTTGT TCGATACCAT CGTGAAAGTG GGTGATGTCT TCCCATCGAC CCCGGTCGTC GCATCGGGTG ACTCTCGCCT GCTGCCAGAG AGTTTCCGCG GTGTGACCGT TGAGAACACC AGCATCCAGG GCCTTACCCT CCAGGGTGGT CGTCTGCATG CGATGAGCCA GCCGGTCTCA AGCAACCTGA ACGACAACTT CGTGACGTTC TACGGCGGCC CGGTCAACTC GCCATGGATC GGTTACGGTG GCGGTGACTA CTCGATCAAC GACAACTGGA CTGTGAGCGT CTACGCCAGC CAGCTGAAAG ACGTCTGGAA TCAGTACTAC GCCGGCACAA GCGTGGTTTA CCCGCTGAGC GACGATCTGG CGCTGATCGG TGGCTTCAAC TACTACAAAG CCGTAGATGA AGGTAAGAAG CGCCTGGGTG AATTCGACAA CAACATCTGG AGTGCCAAGG TCGGTGTGCG TTACGGTGCC CACACCCTGG CCCTGTCGCA TCAGCGCAAC AACGGCGACG ACGATTTCGA CTACCTGCGT CAGTCGGACT CGATTTTCGT CGACAACTCC ATCCAGTACA GCGACTTCAA CTCGCCGAAA GAGCGTTCCT GGATGCTGCG CTATGACCTG AACTTCACCA GCTACGGCAT TCCAGGCCTG ACGTTCATGA CGCGCTACGC CAGAGGCTCG GGTGCGGATT ACTCGAACGC TAACCAGTTC TACATGCGCA CCGACGACAA CGGCAACCCG CTCGACAATC AGAAGCGTTG GGAGCGTGAC GTCGAAGTCA AATACGTTGT CCAAACCGGT CCGGCAAAAG ATCTGTCCTT CCGGTTGCGC CAGGCAACCA CGCGTGCCAC TGCTTTCGAA TCGGATCTGG ATGAAACTCG TGTAATCATC GAGTACCCGC TTTCGATTCT GTAA
|
Protein sequence | MKIKVPLYLA AVSALSGSYA ISAQAEDKPE GFIEGSSLTV LNRNFYFNRD NRDSTAPTYN SGKGNTNGYS EAWAHAIISK FNSGFTQGTV GFGVDAFAMI GLKLDTGDGR NGGRSSFDVL PVDNKGEARD EYTKVGGAAK VRLFDTIVKV GDVFPSTPVV ASGDSRLLPE SFRGVTVENT SIQGLTLQGG RLHAMSQPVS SNLNDNFVTF YGGPVNSPWI GYGGGDYSIN DNWTVSVYAS QLKDVWNQYY AGTSVVYPLS DDLALIGGFN YYKAVDEGKK RLGEFDNNIW SAKVGVRYGA HTLALSHQRN NGDDDFDYLR QSDSIFVDNS IQYSDFNSPK ERSWMLRYDL NFTSYGIPGL TFMTRYARGS GADYSNANQF YMRTDDNGNP LDNQKRWERD VEVKYVVQTG PAKDLSFRLR QATTRATAFE SDLDETRVII EYPLSIL
|
| |