| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Teth514_1187 |
|---|
| Symbol | |
|---|
| ID | 5876820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermoanaerobacter sp. X514 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010320 |
|---|
| Strand | + |
|---|
| Start bp | 1223420 |
|---|
| End bp | 1225144 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 641541537 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_001662817 |
|---|
| Protein GI | 167039832 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.649745 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAG AAGCTATATT TCATAAAAGC GATATGCCTT ACGCATATCC ACTGAATGAA
AATCAATTAA AGATAGTACT AAGGACGGCT GTATTTGATG TAGATAGGGT GTATGTTTTA
TACAAAGACA GATACGATTG GCTGGGAAAA TTCAAAATAA AACCAATGGT ATTAACTCAT
ACCAACGAGT TATTTGATTA TTATGAGACT ACTTTAGAGC TTAATAAAAA ATTTGTGTAT
TTTTTCTATT TGGTATCTGA TGGGGGCGAG AAGTTATATT ATACAGAAGC AGGATTTTAC
AAAAAAAGGC CAGAAAATCA TTTTTGGGGA TTTTTCCATT ACCCGTATAT AGGAGAAAAG
GATGTCTTTT TTGCTCCAGA GTGGACAAGC GATTGCATAG TGTATCAGAT ATTTCCTGAA
AGGTTTAATA ACGGTGACAA ATCAAATGAC CCTGAAAGTG TAAAGCCTTG GGGTGAAAAA
CCTACTGCAG ATTCTTTCTT TGGAGGAGAT TTGCAAGGAA TAATAGATAA AATAGATTAT
TTAAAGGATT TGGGTATAAA TGCTATTTAT TTAACCCCCA TATTTTTATC GCCTTCTACT
CACAAATATG ATACCACTGA TTATTATACA ATTGACCCCC ACTTTGGTGA TACGCAAAAA
GCGAGAGAAC TTGTGCAAAA ATGTCATGAC AATGGCATAA AAGTTATATT TGATGCCGTT
TTTAATCACT GTGGATATGA TTTTTTTGCA TTTCAGGATG TTATTAAAAA TGGTAAAAAA
TCAAAATACT GGAATTGGTT TAATATATAC GAATGTCCAC TTAAAACTCA TCCAAAACCA
TCATATGAAG CTTTTGCAGA TACTGTATGG AGAATGCCAA AACTTATGAC AAAAAATCCA
GAAGTACAGA AGTATTTATT GGAAGTAGCG GAATATTGGA TTAAAGAAGT GGACATAGAC
GGCTGGAGGC TGGATGTTGC TAATGAGATA GACCACCATT TTTGGAGAAA GTTTAGAGAA
GTTGTAAAGG CAGCTAAACC GGAGGCCATA ATTGTAGGAG AGGTTTGGCA TGATGCTTCT
CCTTGGCTTA GAGGGGATCA GTTTGACAGT GTAATGAACT ATCCTTTTAG AAATGCGGTT
GTAGACTTTT TTGCAGAAAG GAAAATAAGT GCTTCTCGCT TTAATACAAT GATTACAGAG
CAACTTATGA GGCATATGGA TAGTGTAAAT AGGGTTATGT TTAATTTAAT AGGAAGTCAT
GATACTGAAA GGTTTTTGAC TTTAGCTAAT GGCATGGTTG CGAGAATGAA GTTAGCGTTG
GTGTTTCAAT TTACCTTTGT TGGAATTCCA TATATTTATT ATGGAGACGA GGTAGGAATG
GTAGGGGGGT ATGACCCTGA TTGTAGAAGA TGCATGATAT GGGAGGAGGA AAAGCAAAAT
AAAAGTATTT TTAATTTCTA TAAAAAGCTG ATTTCTATAA GGAGAGAAAA TGAGGAGCTC
AAATACGGAA GTTTCTGTAC TTTATACGCT ATAGGAAGGG TATTTGCTTT TAAGAGGGAA
TACAAAGGTA AATCAATAAT TGTTGTACTA AATAACAGTA GCAAGCAGGA AGTGATATTT
TTGAATGAAG TAGAAGGAAA AGAAGATATT TTAAAGATGA AGGAATTAAA AAGGAGTGGA
AATCTCCTTT ACTTGCAACC TAACTCTGCC TATATTTTAA AGTAA
|
|---|
| Protein sequence | MIKEAIFHKS DMPYAYPLNE NQLKIVLRTA VFDVDRVYVL YKDRYDWLGK FKIKPMVLTH
TNELFDYYET TLELNKKFVY FFYLVSDGGE KLYYTEAGFY KKRPENHFWG FFHYPYIGEK
DVFFAPEWTS DCIVYQIFPE RFNNGDKSND PESVKPWGEK PTADSFFGGD LQGIIDKIDY
LKDLGINAIY LTPIFLSPST HKYDTTDYYT IDPHFGDTQK ARELVQKCHD NGIKVIFDAV
FNHCGYDFFA FQDVIKNGKK SKYWNWFNIY ECPLKTHPKP SYEAFADTVW RMPKLMTKNP
EVQKYLLEVA EYWIKEVDID GWRLDVANEI DHHFWRKFRE VVKAAKPEAI IVGEVWHDAS
PWLRGDQFDS VMNYPFRNAV VDFFAERKIS ASRFNTMITE QLMRHMDSVN RVMFNLIGSH
DTERFLTLAN GMVARMKLAL VFQFTFVGIP YIYYGDEVGM VGGYDPDCRR CMIWEEEKQN
KSIFNFYKKL ISIRRENEEL KYGSFCTLYA IGRVFAFKRE YKGKSIIVVL NNSSKQEVIF
LNEVEGKEDI LKMKELKRSG NLLYLQPNSA YILK
|
|---|
| |