| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4875 |
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| Symbol | |
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| ID | 5833374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 5447189 |
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| End bp | 5449087 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641370673 |
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| Product | PAS sensor protein |
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| Protein accession | YP_001642314 |
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| Protein GI | 163854271 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3300] MHYT domain (predicted integral membrane sensor domain)
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.152822 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTCCA CCGGCTACAA TCCGGCTCTC GTGGCGCTTT CCCTCGCCAT CGCCGTGCTC
GCCTCCTACA CGGCGCTCGA TCTCGGCGGC CGCGTGCGGG CCGCCGCATC CGGACTGGGC
TGGGCTTGGC TTCTGGGTGC CGCCCTGGCG ATGGGGGGCG GCATCTGGTC GATGCACTTC
GTCGGGATGC TGGCCTTCGA GATGGGCCTG CCCGCCGCCT ACGACCTCGG CCACACCCTC
CTGTCCCTGC TCATCGCCAT TGGGACGACC GGCGCGGCCC TGGCCTGGGT CGGCCGTCGG
CGGGCCGGCC GCTGGGATGT CCTCGTCGCT GGCCCCGTGA TGGGGATCGG CGTGGCGGCG
ATGCACTATA CCGGGATGGC CGCGATGCGG ATGCCCGGCC ATCTCGCCTA CAGCGTGCCG
GTCGTCGCGC TCTCGGTCGG GATCGCCATC ACCGCGGCGA CCATCGCCCT GTGGCTGACC
TTTCGGCCGA CGAGCGTCTG GCAGCGCTTC GCCGCCGCCC TGATCATGGG CGTGGCCGTG
GCCGGGATGC ACTATACCGG CATGGCGGCC GCGACGATCA CCGCCGAGGA AGCCGGCGCC
CATTCCGCTC ATCTCGCCGC GACGAGCGTG GATCAGCAGA ATCTCGCCCT CTACGTCGCC
GGGGTGACCT TCGTGATCCT GTTCCTCGCG ATGCTCGCCT CCGCTTTCGA TCAGCAGAGG
ATCCAGGGCG ATTTGCGGGC GAGCGAGGAG CGTTTCCGGG CCGCCGTACA GGCCGTGCGC
GGCGTGCTGT GGACCAACGA CCCGAAGGGG CGGATGACGG GCGAACAACC CGGCTGGACC
GCCCTCACGG GGCAAACCCG CGCCGAGTAC GAGGGCTTCG GCTGGGCCGA CGCCGTGCAT
CCGGAGGACC GGCAAGCGAG CGTCGAGGCT TGGAATGCGA CTGTCGCCGC CCGCAGCACC
TTTCTGCACG AGCATCGCGT GCGCGCCCGG GACGGCCTGT GGCGACATTT CTCGATCCGC
GCAATCCCCG TGCTCGACCC GCACGGCGCC ATCCGCGAAT GGGTCGGCGT CCATACCGAC
ATCACGGAGC AGCGCGAGGC CGAGGCCGAA TTGCGGGAGT CGAACGACGA GATCCAGCGC
TACGCCTACA TCGTCAGCCA CGACCTGCGC GCGCCGCTCG TCAACGTCAT GGGTTTCACG
AGCGAGTTGG AGGCGGTGCG CCAGGAATTG CGTACGGTGC TGCGTGACCA TCCGCAGGGC
GCGCGGATCG ATGACGACAT GACCGAGGCG CTGAGCTTCA TCCAGGCGGC GATCGTCAAG
ATGGAGCGGT TGATCGCAGC CATCCTGAAG CTCTCGCGAG AGGGGCGGCG CCGGTTCAGC
CCGGAGCCGC TCGCGATGAC GCCCGTCATC CGCGGCATCG CCGACGCGCA GCGTCATCAG
GCCGGGCGCA AGGGTGTGAC GGTGACGGTG GCCGACGATC TTCCCTCGAT CGTCGCCGAC
CGGCTCGCCG TGGAGCAGGT CTTCGGCAAC CTGATCGACA ACGCTCTCAA ATATCTCGAT
CCGGCCCGTC CCGGAACGAT CGAGGTCACG GCCCGGCCTG CACCCGGCAA CCGGATCCGT
TTTGACGTCT CCGATACCGG GCGAGGTATC GCACCGCAGG ATCATGGCCG CATCTTCGAG
CTGTTCCGGC GCTCCGGCAC GCAGGATCAG CCGGGGGAGG GGATCGGGCT CGCCAGCGTG
AAAGCTTTGG TGCGCGCGCT CGGCGGCCGG ATCGAGGTTT CGTCACAACC CGGTGTCGGC
ACAACCTTTA TCGTGACGCT GCCGCGCGAG CCGGTTACAG GCCGAGGCGG GGCCGCGACA
CTCGATCCTC CCGATACGAT GACCCTGGCC GCGGAGTAG
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| Protein sequence | MVSTGYNPAL VALSLAIAVL ASYTALDLGG RVRAAASGLG WAWLLGAALA MGGGIWSMHF
VGMLAFEMGL PAAYDLGHTL LSLLIAIGTT GAALAWVGRR RAGRWDVLVA GPVMGIGVAA
MHYTGMAAMR MPGHLAYSVP VVALSVGIAI TAATIALWLT FRPTSVWQRF AAALIMGVAV
AGMHYTGMAA ATITAEEAGA HSAHLAATSV DQQNLALYVA GVTFVILFLA MLASAFDQQR
IQGDLRASEE RFRAAVQAVR GVLWTNDPKG RMTGEQPGWT ALTGQTRAEY EGFGWADAVH
PEDRQASVEA WNATVAARST FLHEHRVRAR DGLWRHFSIR AIPVLDPHGA IREWVGVHTD
ITEQREAEAE LRESNDEIQR YAYIVSHDLR APLVNVMGFT SELEAVRQEL RTVLRDHPQG
ARIDDDMTEA LSFIQAAIVK MERLIAAILK LSREGRRRFS PEPLAMTPVI RGIADAQRHQ
AGRKGVTVTV ADDLPSIVAD RLAVEQVFGN LIDNALKYLD PARPGTIEVT ARPAPGNRIR
FDVSDTGRGI APQDHGRIFE LFRRSGTQDQ PGEGIGLASV KALVRALGGR IEVSSQPGVG
TTFIVTLPRE PVTGRGGAAT LDPPDTMTLA AE
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