| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4870 |
|---|
| Symbol | |
|---|
| ID | 5834250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 5442060 |
|---|
| End bp | 5442806 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641370668 |
|---|
| Product | sigma-70 family RNA polymerase sigma factor |
|---|
| Protein accession | YP_001642309 |
|---|
| Protein GI | 163854266 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.233795 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAGA CGACCCTCGA CGACCTCGCC TTGCACCCCG ATGACGAGGT GCCGACGCTC
CCTGCTGCTG TCCAGCAACG CCTCGGAGCG CTTCTCGCCG ATGCCTATGC GCAGATGCCG
GGGAATCCGG GTGTCGAAGC CGGTCGCTTC GACGCCTTGC TGGCCAGGCT GGAGACCGTC
CTCGTCGCCC AGGAAGGGAA GGACGAGGAA TCGTTCCGGT CCGCCATCAT CGAGATGACG
CCGCGCCTCT ACAACTTCGC CATGTCGCTG ACGAAGAACC CGTCCGCCGC CGACGACCTC
GTGCAGGATA CGTTCCTGCG GGCGTGGCGC AGCCGTGCGC GTTTCACCGT CGGCACCAAT
CTCGGCGCGT GGCTGTTCAC GATCATGCGC AACGCCTTCT ACTCGCGCCA CCGCAAGGAG
GTGCGCGAGG TCGCCGACAG CGACGGTGAT TACGCCGAGC GCCTCGCCGC GGCACCCGAG
CAGTCGGGCC ATGTCGATCT GATGGATGCG CAGACCGCGC TCGCCAAGCT TCCTCTGCCG
ATGCGGCAGG CGTTGATCCT CGTGGCGATC GAGAACCTCA GCTACGAGGA GGCGGCCACC
GTCATGAATT GCCGCATCGG CACGGTGAAG AGCCGGGTCT GGCGTGCCCG GGAGCAGCTC
GCGCAGATCC TTGGCTACAG CGCCGCCGAT GTCGGCTCCG ACAGCATGAC GCTCTCCGCC
GTCAGCGGCT CGACCTGGAT GGCCTGA
|
|---|
| Protein sequence | MPKTTLDDLA LHPDDEVPTL PAAVQQRLGA LLADAYAQMP GNPGVEAGRF DALLARLETV
LVAQEGKDEE SFRSAIIEMT PRLYNFAMSL TKNPSAADDL VQDTFLRAWR SRARFTVGTN
LGAWLFTIMR NAFYSRHRKE VREVADSDGD YAERLAAAPE QSGHVDLMDA QTALAKLPLP
MRQALILVAI ENLSYEEAAT VMNCRIGTVK SRVWRAREQL AQILGYSAAD VGSDSMTLSA
VSGSTWMA
|
|---|
| |