Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mext_4819 |
Symbol | |
ID | 5833885 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium extorquens PA1 |
Kingdom | Bacteria |
Replicon accession | NC_010172 |
Strand | + |
Start bp | 5383589 |
End bp | 5385049 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641370616 |
Product | transcriptional regulator PpsR |
Protein accession | YP_001642258 |
Protein GI | 163854215 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR02040] transcriptional regulator PpsR |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0232279 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTGACCT TGAGCAGCTT GGCGAGCCCT TCTCCCCGGC GCCCCACCCC GGCGCTGCAA CAGGCAGCCG GTCTCCTCGA TGGAGAGGCG GCCGGGCTGC TGATTGCTGC CACCTCCGAT CTCTCCCTGG TGGTCGATCA TCACGGTATC ATCCGCGATA CCATGGCCGG ACGAGCCGAT CTTGAGGGGC AGGGCATCGA ATCCTGGCTC GGAAAGCCCT GGATCGACAC GGTCACCGTC GAGAGCCGTC CGAAGATCGA TGCGCTGCTG CGCGATGCGG CGCCCGGTAC GATGACCCGC TGGCGGCAGG TCAACCATCC CTCTCCCACC GGCACGGACC TGCCGATTCG CTACGCCACG CTCCGTCCGC AGAAGGATGG GCCGATCATC GTGGTCGGGC AGGATCTGCG GACGATCGCT GCGCTTCAAC GCCGTCTGGC CGAGACGCAG CAGGCGCTGG AGCGGGATTA CGACCGCCTC CGCACCGCCG AGACCCGCTA CAAGCTGCTG TTTCAGCTCT CCGGTGAGCC GGTTCTGGTG GTCGATGCCG GCACACGGCG GGTGACGGAG ATCAACCCGG CGGCGATGCG GCTGCTCGGT CGGCCGCAGA AACGCGTGAT CGGCCAGGAT GCGGCGGACC TGTTCGACGC GGGCAGTCTG CGGGACCTGC AGAGCTCGTT TGCCGGCCTG CGCGTCACTG GGCAGGCGAC GGATCTCGTC GCGCCGTTGG CCGGCGGCCG GGGCGACGTC CGGGTCTCCG CCTCCCTGTT TCGTGGCGAG GGCACGACCT CGGTGCTGTT GCGCCTCGCC ACGCTGGTTC CGGCGGCGCC GGAGCGCGTC GAGTTCGGAG GTGGCGCGCT CGACATCATC CATCGGATGC CGGAGGGCTT CGTCGTCACC GACGCCGCGC GCCGTATCCT CACCGCCAAC ACCGCCTTCC TCGATCTCAC CCAGCACGCC ACCGAGGAGC AGGTTCGCGG CCGGACCCTC GACACTTGGC TCGGCCGCGG GGAAACGGAC GCGCTCGCGC TGTTCGCGAT GCTGCGCGAT CACGGCTCGG TGCGCCACTT CACGACGGCG ATGCGCGGTC AGTACGGCTC GATGGAGGAG GTGGAGGTTG CCGCCGTCTC CACCTCTCAT GCCGATCAGC CCTGTTTCGG CTTCACCGTC CGCGCGACCC CGCGGCGGGC GGCCCCGGTT CATGCCGGTG GCGGGCACGA CCTGCCCCGC TCGGTTGAGC AGATGACCGA ACTCGTCGGG CGCGTCTCCA TGAAGGCCCT GGTGCGCGAG ACGACCGACC TCATCGAGAA GCTGTGCATC GAGGCGGCCC TCCGAATCAC ACGCGACAAC CGTGCCTCGG CGGCGGAGAT GCTCGGCCTG AGCCGTCAGG GTCTCTACGC GAAGATGCGT CGCTACGGCA TCGGCGACCT CGATGGCAAC GACCCTGAGT TGACGTCTTA G
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Protein sequence | MLTLSSLASP SPRRPTPALQ QAAGLLDGEA AGLLIAATSD LSLVVDHHGI IRDTMAGRAD LEGQGIESWL GKPWIDTVTV ESRPKIDALL RDAAPGTMTR WRQVNHPSPT GTDLPIRYAT LRPQKDGPII VVGQDLRTIA ALQRRLAETQ QALERDYDRL RTAETRYKLL FQLSGEPVLV VDAGTRRVTE INPAAMRLLG RPQKRVIGQD AADLFDAGSL RDLQSSFAGL RVTGQATDLV APLAGGRGDV RVSASLFRGE GTTSVLLRLA TLVPAAPERV EFGGGALDII HRMPEGFVVT DAARRILTAN TAFLDLTQHA TEEQVRGRTL DTWLGRGETD ALALFAMLRD HGSVRHFTTA MRGQYGSMEE VEVAAVSTSH ADQPCFGFTV RATPRRAAPV HAGGGHDLPR SVEQMTELVG RVSMKALVRE TTDLIEKLCI EAALRITRDN RASAAEMLGL SRQGLYAKMR RYGIGDLDGN DPELTS
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