| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4678 |
|---|
| Symbol | lpxB |
|---|
| ID | 5834264 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 5228201 |
|---|
| End bp | 5229361 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641370473 |
|---|
| Product | lipid-A-disaccharide synthase |
|---|
| Protein accession | YP_001642117 |
|---|
| Protein GI | 163854074 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0763] Lipid A disaccharide synthetase |
|---|
| TIGRFAM ID | [TIGR00215] lipid-A-disaccharide synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.110539 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCATC GGCGGATCTG GCTCGTGGCG GGCGAGGATT CCGGCGACCA GCTCGGCGCC
AAGTTGATCC GGGCCCTGCG GGCACTCTCG CCCGGGCCCC TGACGCTCGG CGGCGTCGGC
GGCGAGGCGA TGGAGGCGGA AGGCTTCCGC TCGCTCTTCC CGATCGATGA CGTGGCGGTG
ATGGGCTATC TGCCCGTGCT CGCCCGCGCC CGAACCCTGC TGCGGCGCAT CCGCGAGACG
GTCGACGACG TTGTGGCGGG TCGGCCCGAC GTGCTCGTCA TTATCGACAG CCCCGGTTTC
ACCCACGCCG TCGCGACCCG CGTGCGCAAA CGCCTGCCGG ATCTGCCGAT CGTCGATTAC
GTCTCGCCGA GCGTGTGGGC GTGGCGGCCG TGGCGGGCCA AGGGCATGGT GCCCTTCATC
GACCACGTGC TCGCCCTCCT CCCCTTCGAA CCGGACGCGC ATCGCCGTCT TGGCGGGCCG
CCCTGCTCGT ATGTCGGCCA CCCGCTGATC GAACGTCTGG CCGAGCTGCG CCCCTCCTCC
GACGAAGCCG CGATCCGCGA GGGGCGCCCC CCGGTCCTCG CCGTGCTGCC GGGCTCGCGC
CGCTCGGAGA TCGAGCGGCT GATGCCGGTC TTCGGGCAAG CGACCGCCGA CCTCTCCCGA
CGGGTCGGCC CCTTCGAGAT CGAGCTGCCG GCGGTGAGCC GTCACCGCGC CCTGATCGAG
CGGCTCGCCG CCGCGTGGGA GCGGCATCCG CGGATCGTCC ACGGGGAGGC CGACAAGTAC
GCGACCTTCC GCCGGGCGCG GGCGGCGCTC GCGGCCTCCG GCACCGTGAC GCTCGAACTC
GCGCTCGCCG GCGTTCCGAT GGTGGTGGCC TACAAGGTGT CACGGGTCGA GGAAGTCATC
GCCCGACGGC TCATCCAGGT GCCGACGATC GTGCTGCCGA ACCTGATCCT GTCCGAGAAC
GCCATGCCGG AATTCGTGCA GGCCGATTGC ACGCCGGAGC GGCTCGCCGA AACGCTGGCG
CCGCTTCTCG CGGGCGGCCC CGCCCGCCGG ACGCAGCTCG ACGCGCTGGC CCGTATCGAC
GGCCGGATGC GGCTGCCCGG CGACGAGGAA CCGAGCCGGG CGGCGGCCCG GATCGTCTTG
GAGGCACGGC GGGCGACATG A
|
|---|
| Protein sequence | MTHRRIWLVA GEDSGDQLGA KLIRALRALS PGPLTLGGVG GEAMEAEGFR SLFPIDDVAV
MGYLPVLARA RTLLRRIRET VDDVVAGRPD VLVIIDSPGF THAVATRVRK RLPDLPIVDY
VSPSVWAWRP WRAKGMVPFI DHVLALLPFE PDAHRRLGGP PCSYVGHPLI ERLAELRPSS
DEAAIREGRP PVLAVLPGSR RSEIERLMPV FGQATADLSR RVGPFEIELP AVSRHRALIE
RLAAAWERHP RIVHGEADKY ATFRRARAAL AASGTVTLEL ALAGVPMVVA YKVSRVEEVI
ARRLIQVPTI VLPNLILSEN AMPEFVQADC TPERLAETLA PLLAGGPARR TQLDALARID
GRMRLPGDEE PSRAAARIVL EARRAT
|
|---|
| |