| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4578 |
|---|
| Symbol | |
|---|
| ID | 5835110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 5112413 |
|---|
| End bp | 5113438 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641370372 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_001642017 |
|---|
| Protein GI | 163853974 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.248234 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACAG TCTCCCAACC GCGCGACACC GCCATCGTGT TCGGCGGCGG CAACGCGCTC
GGTGCCTATC ATGCGGGCGC CTTCGAGGTT CTGCAGGCCC GTGGCATCCG GCTGGACCGA
TTGGTGGGCG CCTCGATGGG GGCCGTCACC GGGGCGATCA TCGCCGGCAA CGCGCCGGAG
GATCGGATCG AGCGGCTTCA CCGGTTCTGG AACGAGGCGA CCCTGCATAC CGGCCTCTCC
GGAACCGATT TCCTGAAGCC GCGGCAGTAC TACAATGCCC TCCACTCGCT CCTGACGCTG
GCCTGGGGGC GGCCCAGCAT CTTCACGCAC CGCTATCCCG GCCTGTGGTC GGCCCTGCCC
TGGGTGCCCA ACGACGTCGC CCTGTTCGAT CATAGGCCCC TGCGCGCCAC GCTCGAGCGT
CTGGTCGATT TCGAACGCCT GAACCGGGCC GAGATCCGGC TCACTATCGC TTGCATCGAC
GTGGCGACCG GCGAGGAGGT GTTCTTCGAC AACACCCGCC AGACGATCCA GCCCGAGCAC
ATCCTGGCCA GCGCCGCCCT GCTGCCGGCC TTTCCGCCGG TCGAGATCGA CGGGCGGATG
CTGTGCGATG CCGGCTACAC CAACAACCTC CCCCTCGATC CGCTGTTCGA GCCCGAGCCG
ACCCGCGACC TGCTCTGCAT CGCCCTCGAC CTGTTCTCGC TGCGGGCCGA TCGGCCCCGC
TCGCTCGACG CCGTGCTGGA ACGGGCCAAC GATCTCATCT TCGCCAGCGC CGCCCGGCGC
GCGGTGACGG GACTGGCGCG CAGCTACGCC CTGCGCGAGC GGCTCGATCC GGACGGTCCC
GCCGCGACGC TCTTGCACAT CGTCCATCAG GCCGGCGCGG ACCAGCTCGC GTCCAAGAGC
TTCGACTTCT CGCCCTCCTC GATCCGCGAT CGCTGGGAGG CGGGTGCCCG CGACATGGAG
CGGGGTCTCG ACCGCCTGGC CGAGCTGCCG ACTTCCGGCG GGCGCTTCCA CTACGAGTGC
CCGTGA
|
|---|
| Protein sequence | MQTVSQPRDT AIVFGGGNAL GAYHAGAFEV LQARGIRLDR LVGASMGAVT GAIIAGNAPE
DRIERLHRFW NEATLHTGLS GTDFLKPRQY YNALHSLLTL AWGRPSIFTH RYPGLWSALP
WVPNDVALFD HRPLRATLER LVDFERLNRA EIRLTIACID VATGEEVFFD NTRQTIQPEH
ILASAALLPA FPPVEIDGRM LCDAGYTNNL PLDPLFEPEP TRDLLCIALD LFSLRADRPR
SLDAVLERAN DLIFASAARR AVTGLARSYA LRERLDPDGP AATLLHIVHQ AGADQLASKS
FDFSPSSIRD RWEAGARDME RGLDRLAELP TSGGRFHYEC P
|
|---|
| |