| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4536 |
|---|
| Symbol | |
|---|
| ID | 5831277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 5067037 |
|---|
| End bp | 5068710 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641370330 |
|---|
| Product | saccharopine dehydrogenase |
|---|
| Protein accession | YP_001641975 |
|---|
| Protein GI | 163853932 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1748] Saccharopine dehydrogenase and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.802227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.151907 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCCTCG TGGTGGGCGG GGCTGGCGCC TTCGGGTCGC GGCTCGTCGC CGGGCTCGCC
GCGACCACCG ATCTCCGCGT GATCGTTGCC GGCCGCGATG TCACCAAGGC GGAGGCCGTG
GCCCGCACCG TGCCGGACGG ACGCGGGCGG GCGGTACGCC TCGATGCGAC GGAGGTCAGT
GCGGGCGAGT TGCTGGCACT CGGCGCGACA ATCGTGGTGG ACGCGGCAGG GCCGTTCCAG
GGCGGGGCGC CGGTGCTCGC CCGCGCGGCG ATCGAGGCCG GCCTGCCCTA TCTCGACCTT
GCCGACGGCC GCGACTTCGT GGCCGCCTTC CCTGCCCTGG ATGCGGCGGC GCGGGCCAAC
GGCGTCGTTG CGCTGACCGG TGCCAGCTCG ACCCCGGCCC TGTCGAATGC GGCGCTCGAC
GCGCTCACCG CGGGCTGGCG CACGGTCGAG ACGGTGCGGG TCGCCATCGT GCCGGGTAAC
CGGGCGCCGC GCGGCCTCTC GGTGATGCGG GCGATCCTCT CCTATGCCGG GCAGCCGGTG
CGGGTGCTGC GGGCCGGCAC GTGGCAGAAC CGGCCCGGCT GGGGCCTGCT CAGCCGGATC
GCGGTGCCGG GCCTCGGCCG GCGCTTCACC AGCCTGTGCG AGACGCCTGA CCTCGACATC
CTTCCCGCCC GTTTCCCCAC GCTGCGCACG GCCCTGTTCC GCGCCGGGCT CGAACTGCCC
CTGCTGCATC TGGGTCTGAG CCTCGCGAGC CTGCCGGTGC GCTGGCGGCT GCTGCCCTCG
CTCGTGCCCC TCGCCCGCCC CTTCCTGGCG ATGGCCGGCT GGCTCGACCG GTTCGGCAGC
GACCGCGGCG GCATGAGCGT CGAGGCACTG GGGCGGGACG CGACCGGGCG GCCGGTCCGC
GCGGTCTGGA GCCTCGTCGC GGAAGCCGGC GACGGGCCCT ATGTCCCGAC TCTGCCCGCG
CTCGCCGCGA TCCGCCGGCT CACCGATCCG TCCGCCGCGC CAATTCCACC CGGCGCCCGC
CCCTGCGTCG GCGTTCTGCC GCTCGAAGCG ATCGAGGCGG AGATGGCACG CCTCGCCATC
CGCACCCGTC GCGACACCGA TCACCCCGTG CCGCTGTTCG AGCGGGTGCT CGGGGACGGC
TTCGCGCGGA TGCCCGAAGC GTTGCGCGCC GTGCACGGTG CGGTGGGCGA TGGCGCCTTT
CGCGGCCGGG CCGCGGTGAT GCGCGGGCGC GGCCCCCTGG TCGCGCTCGT CGCCGGGTTG
TTCCGGTTGC CGCCCGCCCT GGAGGATGGG CCGATCCGCG TGACGATGGA ACCCGACCTC
GACGCCGGCG CGGAACGCTG GACGCGCCAT TTTCCGGATC GCCGCTTCTC CAGCCGGATG
CGGCGCGTCG GCCCCGACGG GAGCGGGCGG GTGCGCGAGC ATTTCGGCCC GTTCGCGATG
GATCTCGCGG TGAGGGCCCA TGCCGACGGG CTCGACATGG CGGTGACCGG CTGGCGGCTC
GGCCCGCTGC CCCTGCCGCG GTTCTTGCGG CCGACGACGC AGGCGAGCGA GCGGGTCGAT
GCGCAGGGCC GCTTCCGCTT CGACGTGGCC CTATTCCTGC CCTTCCTGGG GCTGCTGGTG
CATTATCGCG GTTGGCTGGT CCGCTGCGAC GAGAGGGAAG AAGAAACGCC ATGA
|
|---|
| Protein sequence | MILVVGGAGA FGSRLVAGLA ATTDLRVIVA GRDVTKAEAV ARTVPDGRGR AVRLDATEVS
AGELLALGAT IVVDAAGPFQ GGAPVLARAA IEAGLPYLDL ADGRDFVAAF PALDAAARAN
GVVALTGASS TPALSNAALD ALTAGWRTVE TVRVAIVPGN RAPRGLSVMR AILSYAGQPV
RVLRAGTWQN RPGWGLLSRI AVPGLGRRFT SLCETPDLDI LPARFPTLRT ALFRAGLELP
LLHLGLSLAS LPVRWRLLPS LVPLARPFLA MAGWLDRFGS DRGGMSVEAL GRDATGRPVR
AVWSLVAEAG DGPYVPTLPA LAAIRRLTDP SAAPIPPGAR PCVGVLPLEA IEAEMARLAI
RTRRDTDHPV PLFERVLGDG FARMPEALRA VHGAVGDGAF RGRAAVMRGR GPLVALVAGL
FRLPPALEDG PIRVTMEPDL DAGAERWTRH FPDRRFSSRM RRVGPDGSGR VREHFGPFAM
DLAVRAHADG LDMAVTGWRL GPLPLPRFLR PTTQASERVD AQGRFRFDVA LFLPFLGLLV
HYRGWLVRCD EREEETP
|
|---|
| |