| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4492 |
|---|
| Symbol | nirA |
|---|
| ID | 5833752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 5009784 |
|---|
| End bp | 5011589 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641370285 |
|---|
| Product | ferredoxin-nitrite reductase |
|---|
| Protein accession | YP_001641931 |
|---|
| Protein GI | 163853888 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0155] Sulfite reductase, beta subunit (hemoprotein) |
|---|
| TIGRFAM ID | [TIGR02435] precorrin-3B synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.550136 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTGAGG CAGCGATGGC AGACGAATTC AACGCCGAGC AGAAGCGCTA CCTGGAGGGC
TTCGCCTCCG GCATCGCCGC GGCCCGCATG ACCGGCGGCC TCGCTGCGGG CCAAGCCCCA
GCGAGCGCGC CGGCTGAGCC CACGGGCCCG GACGCGATCC ACATCAAGGC GCAGATCCGC
ACCGTGAAGA AGGGCGGCAA GCTCTGCGAC CAGGAGAAGT GGAAGCGCGC CGAGAACCCG
TTCGACGGCC ATAACCGGCT GAAGGCGGAG GCCGCCACGG GCAAGGCTCC GAAGCCCGAG
GACAATTTCC GCTGGCGCTA CCACGGCATG TTCTGGGTCG CGCCGACCCA GACCTCCTAC
ATGTGCCGGA TCCGGGTTCC GAACGGCATC CTGCACCACT GGCAGTTCGC CGGCCTCGCC
GACCTCGCCG ACGCCCATGG CGGCGCCTAC AGCCACGTCA CCACCCGCGC GGGCCTGCAG
GTGCGCGAGA TCGCGCCCGA GCACGCCCAG CCCTTCCTCG ACGGGCTAAT CGATCTCGGC
CTGACCGCGC AGGGCGCGGG CGCCGACAAC ATCCGCAACG TCACCGGCTC GCCCGCCGCC
GGCATCGACG CGCAGGAACT GCTGGACACC CGGCCGCTCA CCAAATCCTG GCACAACTGG
ATCCTGAACG ACCGCTCGCT CTACGGCCTG CCGCGCAAGT TCAACGTCTC CTTCGACGGC
GGCGGCGTGA TGCCGGCGCT CGAAGAGACG AACGACATCG GCTTCCAGGC GATCCAGGTG
CTGGAGGGCG CCCCGGTCGC GCCGGGCGTC TGGATGCGCC TCGTGCTCGG CGGCATCTCG
GGCCACAAGG ATCTGGCCCG CGACACCGGG ATCGTCCTCC GGCCCGAGGA CTGCAACCTC
GTGGCCGACG CGATCATCCG GGTCTTCATC GAGAACGGCG ACCGGACCAA CCGCAACAAG
GCCCGGATGA AGTACGTCCT CGATGCCTGG GGCTTCGACA AGTACATCGC CGCGGTCGAG
GAGAAGCTCG GGCACAAGCT CGACCGGGTC GACGCCGCCC ATGTCGCGCC GCGCCGGCCG
ACCGACCGCT TCAGCCATGT CGGCGTCCAT GCCCAGGCCC AGCCCGGCCT GAACTGGGTC
GGTGTGGTGC TCCCCGTCGG CAAGATGACC ACCGACCAGA TGCGCGGGCT GGCGAAGATC
GCCGCGGAAT GCGGCGACGG CCAGATCCGC ATGACGGTCT GGCAGAACTT CATCTTCTCC
GGCGTGCCGG ACGCGAAGGT GGCCGAGGTC GAGGACCGGG TGCTCGCGCT CGGGCTCACG
GTGAAGGCCG CCGGCATCCG CTCGGGCCTC GTCGCCTGCA CCGGCTCGCG CGGCTGCAAG
TTCGCCGCCT CCGACACCAA GGGCCACGCG ATGATCATCG CCGACCATGT CGAGCGGACC
GTGCCGAACC TCGACGTGCC GGTGAACGTG CACCTCACCG GCTGCCACCA TTCCTGCGCC
CAGCACTACA TCGGCGATAT CGGCCTGATC GGCGCCAAGG TCGTCGTCTC GGAGGAGGGC
GACACCGTCG AGGGCTACGA TGTCGTGGTC GGCGGCGGAT TCGCCGAGAA CCCGAAGATC
GGCACCGAGA TCTGGAAGGC GGTGAAGGCC GAGGACGCGC CCTCGCGCGT CGAGGCCCTG
CTCAACGCCT ATCTCGCCCG CCGCCAGGGC CCGGAGGAGA GCTTCCAGGC CTTCACCGCG
CGCACCGGCC CCGAAGCCCT GCGCGACGCC GCCGAAGAAC AACCTGCCCT CAAGGCCGCC
GCATGA
|
|---|
| Protein sequence | MSEAAMADEF NAEQKRYLEG FASGIAAARM TGGLAAGQAP ASAPAEPTGP DAIHIKAQIR
TVKKGGKLCD QEKWKRAENP FDGHNRLKAE AATGKAPKPE DNFRWRYHGM FWVAPTQTSY
MCRIRVPNGI LHHWQFAGLA DLADAHGGAY SHVTTRAGLQ VREIAPEHAQ PFLDGLIDLG
LTAQGAGADN IRNVTGSPAA GIDAQELLDT RPLTKSWHNW ILNDRSLYGL PRKFNVSFDG
GGVMPALEET NDIGFQAIQV LEGAPVAPGV WMRLVLGGIS GHKDLARDTG IVLRPEDCNL
VADAIIRVFI ENGDRTNRNK ARMKYVLDAW GFDKYIAAVE EKLGHKLDRV DAAHVAPRRP
TDRFSHVGVH AQAQPGLNWV GVVLPVGKMT TDQMRGLAKI AAECGDGQIR MTVWQNFIFS
GVPDAKVAEV EDRVLALGLT VKAAGIRSGL VACTGSRGCK FAASDTKGHA MIIADHVERT
VPNLDVPVNV HLTGCHHSCA QHYIGDIGLI GAKVVVSEEG DTVEGYDVVV GGGFAENPKI
GTEIWKAVKA EDAPSRVEAL LNAYLARRQG PEESFQAFTA RTGPEALRDA AEEQPALKAA
A
|
|---|
| |