| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4358 |
|---|
| Symbol | |
|---|
| ID | 5833447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 4846995 |
|---|
| End bp | 4848260 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641370151 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001641798 |
|---|
| Protein GI | 163853755 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGAGC CGGCCGTGCA CCCCCATCGC GACACGTCCC TAGGCCATTT TCTCTTCCGG
CGCAGCGCCG GGGTCGGCCT CGCTCTCGCC TTGCTGGCGG GTGCTTCCTA TCAGTTCGTC
TCGGCACCGC TCTTCAAGGG GGATGCGGCG GTCGCTGCAA CGCCGCAAGC CGAGCAGGCC
GCACCGGCTT CAGTCGCCAC CGTCGAGCCG CGGGACGTCG TCCTCTGGGA CGCGTTTTCG
GGCCGGCTCG AAGCCGTCGA CCGAATCGAC GTGCGGGCCC GCGTCGGCGG CGCGATCCAG
TCCACGCACT TCGTGGAAGG CGAGCTTGTC GAGGCCGGCG ATCTCCTCGT GACCATCGAT
CCGGCGCCCT ACGCGGCGGA GGTCCAGCGT CTGGAGGCCC AGGTGGCCGG CGCCGAGGCG
CGCGTCGCCC TGACGTCGAG CGATCTAGAG CGCGGGCGCA GACTCTCCGA CCAGCAGATC
GTCACGGCGC GCGACCTCGA CGTGCGCGCC AACGCCTTCA AGGAAGCGAA GGCGAGCCTC
GACGCGGCGA AGGCGGCGCT GGAGGCGGCG CGCCTGAACC TGAGCTATAC CCAGGTGCGG
GCCGCGGTGG GCGGACGCGT CGGACGCCGG GAGATCACGC CGGGCAACCT CGTGGCGACG
GGAGCGGGGG CCGCGGTGCT CACCACCCTC GTCTCGGTCG ATCCGGTCTA CGCGAGCTTT
GACGCGGACG AGACCGTTGT TGTGAAGGCC CTGGCCTCGA TCGCCGGCCC CGCGGGCGGG
CGCGGCAGGC TCGACCGCAT CCCCGTCGAG ATGGTGACGG CGGATGGGGT TCGCGCCCGC
GGGCATCTGC AGTTCATCGA TAACAAGGTC GATGCCCGCA GCGGCACGGT TCGGGTGCGC
GCCACCTTCG CCAACGGCGA CGGCCACCTC ATTCCCGGTC AGTTCGCGCG GATGCGGCTC
GGTCAGGCCA CGCCCGAGCG CTTGCTCCTC GTCGATGAAC GGGCCGTCGG CACCGATCAG
GACAAGAAGT TCGTGCTCGT GGTCGGAGCA GACGACCGCG CCGAGTTCCG CGCCGTCACC
CTCGGCCGGG CGGTCGAGGG CCTGCGCGTC GTGGCCGCGG GCCTCTCCGG CGGCGAGCGC
ATCGTCGTCA ACGGATTGCA GCGCATCCGC CCCGGTACGC TCCTGCGCCC TGAGCCGGTG
GCGATGGGCG TGCGTGCGCC CGGTGCCGCC GGAGCGCGCG AGCTCGCCAG CGCCGAGGCC
CCGTAG
|
|---|
| Protein sequence | MSEPAVHPHR DTSLGHFLFR RSAGVGLALA LLAGASYQFV SAPLFKGDAA VAATPQAEQA
APASVATVEP RDVVLWDAFS GRLEAVDRID VRARVGGAIQ STHFVEGELV EAGDLLVTID
PAPYAAEVQR LEAQVAGAEA RVALTSSDLE RGRRLSDQQI VTARDLDVRA NAFKEAKASL
DAAKAALEAA RLNLSYTQVR AAVGGRVGRR EITPGNLVAT GAGAAVLTTL VSVDPVYASF
DADETVVVKA LASIAGPAGG RGRLDRIPVE MVTADGVRAR GHLQFIDNKV DARSGTVRVR
ATFANGDGHL IPGQFARMRL GQATPERLLL VDERAVGTDQ DKKFVLVVGA DDRAEFRAVT
LGRAVEGLRV VAAGLSGGER IVVNGLQRIR PGTLLRPEPV AMGVRAPGAA GARELASAEA
P
|
|---|
| |