| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4228 |
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| Symbol | |
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| ID | 5834808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 4705694 |
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| End bp | 4707292 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641370019 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_001641668 |
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| Protein GI | 163853625 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.250212 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGCT TCTCGAGAAC CAAGATTTTC GCGACCCTGG CCATCATCCT GATCGGTCTG
AGCCTCGCAG TGCCGAGCTT CTTCTCGAAG GAGCAGCGCG AGGCCTTCGT CAACGCGCTG
CCGAAATCGA TCCAATGGAT GGTGCCGACC CGGGCGATCG TGCTCGGCCT CGACCTCCAG
GGCGGCTCGC AGATCCTGCT GGAAATCGAC CAGCCCGACC TCGTCCGCTC GATGGTCACC
GGCCTGCGCG ACGACGTGCG CCGCATCCTG CGCGAGGCCG CGGTCTCGCC GGACGGCGGC
ATCCGCGTCA TCAACCGCGG CGTCGAACTG CGCATCCCCG ATGCGGCGGC CCGCGCGAAG
GTGATGCCGA AGCTGCGCGA ACTCGCAGCC CCCATCAACA ACCCGCTCGC CGCCGGCGGC
CAGACCCTCA CGGTCAACGA GGCCGAGAAC GGCACGATTC AGCTCGTCCT CACCGAGGCC
GGCATCAACG ACCGCACCCG CCGTGCGGTC AGCCAGGCGA TCGAGGTCGT GCGCAAGCGC
ATCGATTTCG GCGGCACCAA GGAGCCGTCG ATCCAGCAGC AGGGTGCCAG CCGCATCCTC
GTCCAGGTGC CGGGCCTGCA GAACCCGCAG GAACTGGAAG ACCAGCTCGG CAAGACCGCC
AAGCTCGAAT TCCGGATGCT GGCCGATTCG CCCTCCGGCG ACGTTGACAT GCTCGCCTCG
AAGGACGAGG GCGGCGCCAA GGTGCCGGTC GAGCGCCGGG TCATGGCCGA TGGCAGCGAT
CTCACCGACG CCCAGCCCGC CTTCGACCCG CAGACCCACG AGCCGATGGT GAGCTTCAAG
TTCAACCTGC GTGGCGCCCA GCGCTTCGGC CAGGCGACCT CGGAGAATGT CGGCCGGCGC
ATGGCGATCG TGCTCGACAA CGTGATCCAG TCGGCCCCGG TGATCCGCTC GGCGATCACC
GGCGGCACCG GCCAGATCAC CGGCAACTTC ACCGTCAAGG ACGCCAACGA CCTCTCGGTG
CTGCTGCGGG CCGGCGCGCT GCCGGCCAAG CTCACCGTGG TCGAGCGCCG TGTCGTCGGC
CCCGGCCTCG GCCGCGACTC GATCGAGGCC GGCAAGATGG CGACCCTGGT CGCGGGCGGC
CTCGTCATTG CCTTCATGTT CGCGACCTAC GGCACCTTCG GCTTCATCGC CAACATCGCC
CTGATCGTGC ACGTCGGCCT GATCCTCGGC CTGATGTCGG TGCTGGAGGC GACGATGACG
CTGCCGGGCA TCGCCGGCAT CGTGCTCACC ATCGGCACGG CGGTCGATTC GAACGTGCTG
ATCTACGAGC GCATGCGCGA GGAAGCCCGC GGCGGCCGCT CCCTGGTCTC GGCGCTTCAG
GCCGGCTTCG ACCGGGCGTT CGCCACCATC ATCGACTCGA ACTCGACCAT GGCGATCGCC
GCCCTGCTCT TGTTCTTCAT GGGCTCGGGC CCGGTGAAGG GCTTCGCCGT GGTGTTCATC
CTCGGCATCC TCACCACCGT CATCACCGCC GTGACGCTGA CGCGCATGAT GATCGCGCTG
TGGTACAACT GGTTCCGGCC CAAGGCCCTG CCGTTCTAG
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| Protein sequence | MLRFSRTKIF ATLAIILIGL SLAVPSFFSK EQREAFVNAL PKSIQWMVPT RAIVLGLDLQ
GGSQILLEID QPDLVRSMVT GLRDDVRRIL REAAVSPDGG IRVINRGVEL RIPDAAARAK
VMPKLRELAA PINNPLAAGG QTLTVNEAEN GTIQLVLTEA GINDRTRRAV SQAIEVVRKR
IDFGGTKEPS IQQQGASRIL VQVPGLQNPQ ELEDQLGKTA KLEFRMLADS PSGDVDMLAS
KDEGGAKVPV ERRVMADGSD LTDAQPAFDP QTHEPMVSFK FNLRGAQRFG QATSENVGRR
MAIVLDNVIQ SAPVIRSAIT GGTGQITGNF TVKDANDLSV LLRAGALPAK LTVVERRVVG
PGLGRDSIEA GKMATLVAGG LVIAFMFATY GTFGFIANIA LIVHVGLILG LMSVLEATMT
LPGIAGIVLT IGTAVDSNVL IYERMREEAR GGRSLVSALQ AGFDRAFATI IDSNSTMAIA
ALLLFFMGSG PVKGFAVVFI LGILTTVITA VTLTRMMIAL WYNWFRPKAL PF
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