| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4193 |
|---|
| Symbol | |
|---|
| ID | 5833527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 4662794 |
|---|
| End bp | 4663789 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641369983 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001641633 |
|---|
| Protein GI | 163853590 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.203836 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGGC TGTCGCGACC GACCGGCGAT GACGGCTCGT CGCCGGCTGC CCCCGCCCAT
GCGGGGCGGC TGTCTCAGCG CCTGGGGCGT GGTCTCGTCC GCGGCCTGCC GCTGCTGTGG
CTGGCGCTGT TCTTCCTCGT GCCCTTCGCG GTGACGCTGA AGATCAGCTT CTCCTCGCCG
GCCACCGCGC AGCCGCCCTA CCTGCCCTTG CTCGAATGGG ATGGCGGCTT GGAGGGCTGG
CGCGAGTTCT TCGAGGCGCT CGACTTCCAG AACTACCAGA TGATCGCGGC CGACGCGCTC
TACCGCGACG CCGCCCTCTC CTCGCTGGGC TATGCCGCGC TCGCCACCGC GATCCTCATC
GGGATCGGCA CGCCGACGGC CTACGCCATG GCCCGCGCCT CAGCGCGCTG GCAGCCGATC
CTCGTGGCGC TGGTCATCGT GCCGTTCTGG ACGAGTTTTT TGATCCGGGT CTATGCCTGG
ATCGCGATCC TCAAGCCCGA GGGGCTGCTC AACGCGGCCC TGCTGAAACT CGGCCTGATC
GCCGCGCCGC TGCCGATTCT CGATAGCCCC TATGGCGTGC TGATCGGGCT CACCTACGCC
TACCTGCCCT TCATGGTGCT GCCGCTCTAC GCGGTGATGA GCCGGCTCGA TCCGGCACTC
ACCGAGGCCG CCGCCGATCT CGGCGCGTCG CGGGCGCGGG CCTTCTTCAC CGTCACACTG
CCGCTCAGCC TGCCCGGCCT CGCCGCCGGG GCGTTGCTCT GCTTCATCCC GATGGTCGGC
GAGTTCATCA TCCCCGATCT GCTCGGCGGC TCCGACACGC TGATGCTCGG GCGCGTGCTG
TGGAGCGAGT TCTTCTCCAA CCGCGACTGG CCGCTGGCCT CGGCGGTGGC GGTGCTGTTG
CTGATCCTCG TGGTCGGGCC CGTGGTGCTG TTCCGCGAGG CCGAGCTGCG CCGCGAGGAA
GCGGTGGAAG GGGCTCAGGA AGGGGCCCAG CGATGA
|
|---|
| Protein sequence | MSGLSRPTGD DGSSPAAPAH AGRLSQRLGR GLVRGLPLLW LALFFLVPFA VTLKISFSSP
ATAQPPYLPL LEWDGGLEGW REFFEALDFQ NYQMIAADAL YRDAALSSLG YAALATAILI
GIGTPTAYAM ARASARWQPI LVALVIVPFW TSFLIRVYAW IAILKPEGLL NAALLKLGLI
AAPLPILDSP YGVLIGLTYA YLPFMVLPLY AVMSRLDPAL TEAAADLGAS RARAFFTVTL
PLSLPGLAAG ALLCFIPMVG EFIIPDLLGG SDTLMLGRVL WSEFFSNRDW PLASAVAVLL
LILVVGPVVL FREAELRREE AVEGAQEGAQ R
|
|---|
| |