| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4163 |
|---|
| Symbol | |
|---|
| ID | 5835309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 4632136 |
|---|
| End bp | 4635726 |
|---|
| Gene Length | 3591 bp |
|---|
| Protein Length | 1196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641369953 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_001641603 |
|---|
| Protein GI | 163853560 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC CCCAACCCAA GCCACCCGTT CCGAAGCCGC AGACCGCGCG CTTCGCCCTG
CCGAAATCGG CGCCCCTGAC CAAGGCCCTC GATGCGATCA AGCGCGGCGA CAGCCCGACG
CTGGCGAGCG TCCCCGACGG CTTCGATGCG CTGGTGGCGG CCGACCTCGC CCGCGCGCTG
TCCGGTTCGT TCGAGGGGCC GGCGGTGCTG GTCCACGTCG CCCGTGATTC CGGCCGCTCC
AACGCCTTCC AGAACGCGCT GAAATTCGTC GCCCCCGAGA TCGAGGCGAT GAGCGTTCCG
GCCTGGGACT GCCAGCCCTA CGACCGGGTG TCGCCGAACG GGGCCATCGC CGCCCAGCGC
ATGACCGCGC TGTCGCGGCT GACCCGTTCG CGCTCGTCGG AGGAGAAGCC GCGCATTCTC
TGCACCACCG TCAACGCCCT GGTGCAGCGG GTGCCGCCGC GGTCGCGCGT GGCCGTCGAG
ACCTTCTCGG CGGCGATCGG CAACGTGGTG CCGATGGACA AGGTCGTGGC CTGGGTGGAA
GCGAACGGCT TCCTGCGCAC GGGAACGGTG CGCGATACGG GCGAATACGC CGTGCGCGGC
GGCATCCTCG ACCTGTCGCC CCCCGGCCTG CCGAACCCGA TCCGCCTCGA CTTCTTCGGC
GACACGCTCG AATCGATCCG CGCCTTCGAT CCCGAGACGC AGCGCACGGT GGGGTCCCTA
CGCTCTCTCG ACCTCGTGCC GATGAGCGAG GTGCAGCTCA CCACCGAGAC GATCCGGCGC
TTCCGGCAGG GCTATTTGTC GAGCTTCGGC GCGGCGACCC GTGACGACCG GCTCTACGAG
ACGGTGAGCG AGGGCCGGCG CTACGCCGGC CTCGAGCACT GGATGCCGCT GTTCTACGAC
GGCCTCGACA CCCTGTTCGA CTATCTCGGC GACGTGCCGA TGCTGTTCGA CCCGCAGGTG
GAGGAGGCGG CCACCGAGCG GCTCGCCCTG ATCCAGGACT ATTTCCAGGC CCGCGAAGCG
GCGCTGAAGA ACCCGCAGAG CGGCGTCGCG CCCTACAAGC CGTTGCCGCC GCGCGCGCTC
TACCTCACGC CCAACGAGTG GAAGAGCAAG GTCGAGTCCG GCACGGTGGT CCGGCTCACC
CCCTTCGCGA CGCCGGATTC CGACGAGCGC GCGGTCATCG ATTGCGGCGC CAGGGCGGGG
CGAAGCTTCG CGCCCGAGCG GGCCGACGAC GCGGCCAGCG TGTTCGACGC GGCGGTCGCG
CATATCCGCG ATCTCCAGGC ATCCGGGCAT CACGTGATCC TTGGATCCTG GTCCGAGGGC
TCGCGCGACC GGCTCTGCGG CGTGCTGACC GATCACGGGC TCAAGAAGCC GACGGTGATC
AACACCTTCG CCGCGGTCAA CGCGCTCAAG CGCGGCACCG ACGTGGCGGT CGCGGTCTGG
GGGCTGGAAT CCGGCTTCAC CCTCGACCGG CTCGCGGTGG TGGCCGAGGG CGACATCCTG
GGCGACCGGC TGGTGCGCCA GAAGCGCAAG TCCAAGCGCC CGCAGGACAT CATCCTGGAG
GTGCAGGCGC TCCAGCCCGG CGATCTCGTG GTCCATGCCG ACCACGGCAT CGGCCGCTTC
GTCACGCTCA AGACCGTCAC CGCGGCGGGC GCGCCGCACG ATTGCCTCGA ACTGCAATAT
GCCGGCGGCC TGCTGCTGCT GCCGGTCGAG AACATCGAAC TCCTAACCCG CTACGGCTCC
GAGGATTCGG AGGTCGCGCT GGACCGCCTG GGCGGCGGCG CCTGGCAGGC CCGCAAGGCC
AAGATGAAGC GCCGCATCCT CGAGATGGCC GGCGACCTCA TCAAGATCGC CGCCGCGCGG
TTCGTGAAGT CCGCCCCCAG CCTCAAGGCG CCGGAGGGGC TCTACGAGGA ATTCGCCGCC
CGCTTCGCTT TCCAGGAGAC CGAGGATCAG GCCAACGCCA TCGACGCGGT GCTCGACGAC
CTCAACGCGG GGCGTCCGAT GGACCGCCTC GTCTGCGGCG ATGTCGGCTT CGGCAAGACC
GAGGTGGCCC TGCGCGCCGC CTTCGCCGCG GCGATCTCCG GCAAGCAGGT GGCGGTGGTG
GTGCCCACCA CGCTGCTCGC CCGCCAGCAT TTTCGCACGT TCGCCGAACG GTTTAAGGGC
CTGCCGATCA ACGTTGCGCA GCTCTCCCGC TTCGTCTCGG CCGGCGATCA GCGCCAGAAC
CGGGCCGGGC TCGCCGACGG GACGGTCGAC ATCGTCGTCG GCACCCATGC CCTGCTCGCC
AAGAACGTCG CGTTCAAGGA TCTCGGCCTC ATCATCGTCG ACGAGGAGCA GCATTTCGGT
GTCGCCCACA AGGAGCGGCT TAAGGCGCTC CAGGCGGATG TCCACGTGCT GACGCTCTCG
GCCACCCCGA TTCCGCGCAC GCTGCAGCTC GCCATGACGG GTGTGCGCGA ACTCTCGATC
ATCGCCACCC CCCCGATGGA TCGGTTGGCG GTGCGCACCT TCGTGACGCC GTTCGATCCG
CTGCTGGTCC GCGAGGCGCT GCTGCGCGAA CGCTATCGCG GCGGCCAGTC GTTCTACGTC
GCCCCGCGCA TCGAGGACCT GGCCGAGGTC AAACGCTTCC TCGATACCGA GATGCCCGAG
ACCACCGTCG CGGTCGCCCA CGGCCAGATG GCGGCGGGCC AGCTCGAGGA CGTGATGACG
GCGTTCTACG AGGGCAAGTA CGACGTGCTG CTCTCGACCA CGATTGTCGA ATCCGGCCTC
GACATCCCGA CCGCCAACAC GCTGATCGTG CACCGGGCCG ACATGTTCGG TCTGGCCGCG
CTCTACCAGT TGCGCGGGCG CGTCGGCCGC TCGAAGGCGC GGGCCTACGC CCTGTTCACG
ACGCCGGCCA ACCGCCAGCT CACGACCCAG GCCGAACAGC GCCTGAAGGT GCTCCAGAGC
CTCGACACGC TGGGCGCCGG CTTCCAGCTC GCGAGCCACG ATCTCGACAT CCGCGGCGCC
GGCAACCTCC TGGGCGATGC CCAGTCCGGC CACATCAAGG AAGTCGGCTA CGAGCTCTAC
CAGCAGATGC TGGAGGATGC GGTCACCGCC CTCAAGGCTG GCATCGAGGA GCCGGTGGAG
GAGGCGTGGT CGCCGACCAT CGCGCTCGGC GCTCCGGTCA CGATCCCCGA GGACTACGTC
GAGGACCTGA CCGTCCGGCT CGGCCTCTAC CGGCGCCTCT CGACCCTCGA GAACGATGCC
GAGATGGAGA GCTTCGGTGC CGAGCTGATC GACCGCTTCG GCCCGCTGCC GCCGGAGGTG
GAACAGCTCC TGAAGATCGT GACCATCAAG ATCCTGTGCC GCGACGCCAA TGTCGAGAAG
GTCGAGGCCG GGCCGAAGGG CGTGGTGGTC CACTTCCGCG ACAAGTCCTT CGCCAACCCG
CAGGGGCTCG CCGCCATGGT CGTGGAGCAG GGCTCCTTCG CCAAGGTGCG GCCCGATATG
AGCGTCGTGT TCATCCGCGA ACTCGACGGC ATCCCGCGGC GGCTGAAGGA GACGACGCAG
ATCCTGCGCG GGCTCGTCAC GATCGCCAAG CGCGCCAAGA AGGCCGCCTG A
|
|---|
| Protein sequence | MAKPQPKPPV PKPQTARFAL PKSAPLTKAL DAIKRGDSPT LASVPDGFDA LVAADLARAL
SGSFEGPAVL VHVARDSGRS NAFQNALKFV APEIEAMSVP AWDCQPYDRV SPNGAIAAQR
MTALSRLTRS RSSEEKPRIL CTTVNALVQR VPPRSRVAVE TFSAAIGNVV PMDKVVAWVE
ANGFLRTGTV RDTGEYAVRG GILDLSPPGL PNPIRLDFFG DTLESIRAFD PETQRTVGSL
RSLDLVPMSE VQLTTETIRR FRQGYLSSFG AATRDDRLYE TVSEGRRYAG LEHWMPLFYD
GLDTLFDYLG DVPMLFDPQV EEAATERLAL IQDYFQAREA ALKNPQSGVA PYKPLPPRAL
YLTPNEWKSK VESGTVVRLT PFATPDSDER AVIDCGARAG RSFAPERADD AASVFDAAVA
HIRDLQASGH HVILGSWSEG SRDRLCGVLT DHGLKKPTVI NTFAAVNALK RGTDVAVAVW
GLESGFTLDR LAVVAEGDIL GDRLVRQKRK SKRPQDIILE VQALQPGDLV VHADHGIGRF
VTLKTVTAAG APHDCLELQY AGGLLLLPVE NIELLTRYGS EDSEVALDRL GGGAWQARKA
KMKRRILEMA GDLIKIAAAR FVKSAPSLKA PEGLYEEFAA RFAFQETEDQ ANAIDAVLDD
LNAGRPMDRL VCGDVGFGKT EVALRAAFAA AISGKQVAVV VPTTLLARQH FRTFAERFKG
LPINVAQLSR FVSAGDQRQN RAGLADGTVD IVVGTHALLA KNVAFKDLGL IIVDEEQHFG
VAHKERLKAL QADVHVLTLS ATPIPRTLQL AMTGVRELSI IATPPMDRLA VRTFVTPFDP
LLVREALLRE RYRGGQSFYV APRIEDLAEV KRFLDTEMPE TTVAVAHGQM AAGQLEDVMT
AFYEGKYDVL LSTTIVESGL DIPTANTLIV HRADMFGLAA LYQLRGRVGR SKARAYALFT
TPANRQLTTQ AEQRLKVLQS LDTLGAGFQL ASHDLDIRGA GNLLGDAQSG HIKEVGYELY
QQMLEDAVTA LKAGIEEPVE EAWSPTIALG APVTIPEDYV EDLTVRLGLY RRLSTLENDA
EMESFGAELI DRFGPLPPEV EQLLKIVTIK ILCRDANVEK VEAGPKGVVV HFRDKSFANP
QGLAAMVVEQ GSFAKVRPDM SVVFIRELDG IPRRLKETTQ ILRGLVTIAK RAKKAA
|
|---|
| |