| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4032 |
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| Symbol | |
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| ID | 5835286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 4482618 |
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| End bp | 4484303 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641369823 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001641473 |
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| Protein GI | 163853430 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.211058 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCCC TCGCCGCTCC GTCGCTGTCG ATCGCCCTGC CGTTCGAGGC GGCGCTGGCC
GAGATGGCCG CGCCCCTGCT CCTGCTCGAT GCGGGCGGCA GCGTCGTCTT CGCCAATGCC
CACGCGGCGG CCTTGCTCGC CTGCACCGAA CCGGTCGGCC TTCCCCTCCC CGCCCTGCTG
GTACCCTTCG GCGCCGCGGA GCCGGAGGCC GAGCCCATCC TGGAAGCTGT GCGCGCCGCC
CGCCCCATCC GGGTGCGGCT CACCCTCGGC GGCGACCGCC GCGTCGAGGC GGCGCTGGCG
CCACTCTCGG CCGGCGGCTT CGCCCTCACC TTCGAGGACG TGACCGAGCA ACTCCGCGGC
GCGGCCCTGG CCCGGCAGGA GCCGCTCACC GGCCTGTGCA ACCGCGTCGG CCTGCACGAC
CGCCTCGACG CGGCGCTGAC CGAGGCGGCC CGGACGGGGG CACCGCTCGC GGTGCTGATG
CTCGACCTCG ATCGGTTCAA GACGGTCAAC GACACCCTCG GGCATCCGGT CGGCGATGCG
CTCCTGCGCA AGGTCGCCGA GCGCCTGCGC CGGGCCACCC GCAGCGGGGA TCTGGTCGCG
CGGCTCGGCG GCGACGAGTT CGCCATCCTT CAAGTCGATC CCCAAGTTGG ACCCCATGCT
GGCGTCGAGC AGCCGCACGC GGCCGAGGCG CTGGCACGCC GCCTCGTCGA TCTCGTCGGG
CGCACCTACG TCGTCGATGG CCACATGCTC AATGTCGGCG TCAGCGTCGG CGTCGCCATC
GCCCCCGCCG ACGGCCAGAA CGCCGACGAC CTGCTGAAAC ACGCCGACCT CGCGCTCTAC
CGGGCCAAGG CCGCGGGCCG GGGCACCTAC CGCTTCTTCG AGCCGGCGAT GAACGCGCAG
ATGCAGGCGC GCCGCGGCCT GGAGATCGAC CTGCGCCGGG CAATGGCCCT CAAGCAGTTC
GACCTCGCCT TCCAGCCGCA AATCCAACTG GAGAGCGGGG ACGTGACGGG CTTCGAGGCG
CTGCTGCGCT GGAACCACCC CGAGCGCGGA CCGGTCTCGC CGGCCCTGTT CATCCCGTTG
GCCGAGGAGA TCGGCGTCAT CGTCGGCATC GGCGAGTGGG TGTTGCGCAC CGCCTGCCGC
GAGGCGGCGC GCTGGCCGCA CCCCGCATCG ATCGCCGTGA ACCTCTCGCC GGTGCAGTTC
CGCGGCGGCC GGCTGGTCGA GACGGTGACG AACGTGCTGG CCCAGACCGG CCTCGACCCG
GCCCGGCTGG AACTGGAGAT CACCGAAGGC GCGCTCCTCG AGAACACCGA CAGCGTGCTC
GACGTGCTGA ACGGCCTGCG CGCGCTCGGC GTGAAGATCT CGATGGACGA TTTCGGCACC
GGCTACTCGT CCTTGAGCTA CCTGCAGAAA TTCCCCTTCG ACAAGATCAA GATCGACCAG
TCCTTCGTCC GCGGCATGGA GGGCAATGCC GAGTGCGGAG CGATCGTGCG AGCCATCGCC
CGGCTCGGCG CCAGCCTCGG CATGCGCACC ACCGCCGAAG GGGTCGAGAC GGCGACGCAG
CTCGACGCCA TCCGCGCCGA GGGCTGCACC GAGGTCCAGG GCTACCTGAC GGGACGCCCG
ATGCCGGCCG CCCAGGCCGC CGCCCTGTTG TCTGCCGCTC CCTCGCCCTC GACCTTGCCC
GCCTGA
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| Protein sequence | MSALAAPSLS IALPFEAALA EMAAPLLLLD AGGSVVFANA HAAALLACTE PVGLPLPALL
VPFGAAEPEA EPILEAVRAA RPIRVRLTLG GDRRVEAALA PLSAGGFALT FEDVTEQLRG
AALARQEPLT GLCNRVGLHD RLDAALTEAA RTGAPLAVLM LDLDRFKTVN DTLGHPVGDA
LLRKVAERLR RATRSGDLVA RLGGDEFAIL QVDPQVGPHA GVEQPHAAEA LARRLVDLVG
RTYVVDGHML NVGVSVGVAI APADGQNADD LLKHADLALY RAKAAGRGTY RFFEPAMNAQ
MQARRGLEID LRRAMALKQF DLAFQPQIQL ESGDVTGFEA LLRWNHPERG PVSPALFIPL
AEEIGVIVGI GEWVLRTACR EAARWPHPAS IAVNLSPVQF RGGRLVETVT NVLAQTGLDP
ARLELEITEG ALLENTDSVL DVLNGLRALG VKISMDDFGT GYSSLSYLQK FPFDKIKIDQ
SFVRGMEGNA ECGAIVRAIA RLGASLGMRT TAEGVETATQ LDAIRAEGCT EVQGYLTGRP
MPAAQAAALL SAAPSPSTLP A
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