Gene Mext_4032 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMext_4032 
Symbol 
ID5835286 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium extorquens PA1 
KingdomBacteria 
Replicon accessionNC_010172 
Strand
Start bp4482618 
End bp4484303 
Gene Length1686 bp 
Protein Length561 aa 
Translation table11 
GC content72% 
IMG OID641369823 
Productdiguanylate cyclase 
Protein accessionYP_001641473 
Protein GI163853430 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.211058 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCCC TCGCCGCTCC GTCGCTGTCG ATCGCCCTGC CGTTCGAGGC GGCGCTGGCC 
GAGATGGCCG CGCCCCTGCT CCTGCTCGAT GCGGGCGGCA GCGTCGTCTT CGCCAATGCC
CACGCGGCGG CCTTGCTCGC CTGCACCGAA CCGGTCGGCC TTCCCCTCCC CGCCCTGCTG
GTACCCTTCG GCGCCGCGGA GCCGGAGGCC GAGCCCATCC TGGAAGCTGT GCGCGCCGCC
CGCCCCATCC GGGTGCGGCT CACCCTCGGC GGCGACCGCC GCGTCGAGGC GGCGCTGGCG
CCACTCTCGG CCGGCGGCTT CGCCCTCACC TTCGAGGACG TGACCGAGCA ACTCCGCGGC
GCGGCCCTGG CCCGGCAGGA GCCGCTCACC GGCCTGTGCA ACCGCGTCGG CCTGCACGAC
CGCCTCGACG CGGCGCTGAC CGAGGCGGCC CGGACGGGGG CACCGCTCGC GGTGCTGATG
CTCGACCTCG ATCGGTTCAA GACGGTCAAC GACACCCTCG GGCATCCGGT CGGCGATGCG
CTCCTGCGCA AGGTCGCCGA GCGCCTGCGC CGGGCCACCC GCAGCGGGGA TCTGGTCGCG
CGGCTCGGCG GCGACGAGTT CGCCATCCTT CAAGTCGATC CCCAAGTTGG ACCCCATGCT
GGCGTCGAGC AGCCGCACGC GGCCGAGGCG CTGGCACGCC GCCTCGTCGA TCTCGTCGGG
CGCACCTACG TCGTCGATGG CCACATGCTC AATGTCGGCG TCAGCGTCGG CGTCGCCATC
GCCCCCGCCG ACGGCCAGAA CGCCGACGAC CTGCTGAAAC ACGCCGACCT CGCGCTCTAC
CGGGCCAAGG CCGCGGGCCG GGGCACCTAC CGCTTCTTCG AGCCGGCGAT GAACGCGCAG
ATGCAGGCGC GCCGCGGCCT GGAGATCGAC CTGCGCCGGG CAATGGCCCT CAAGCAGTTC
GACCTCGCCT TCCAGCCGCA AATCCAACTG GAGAGCGGGG ACGTGACGGG CTTCGAGGCG
CTGCTGCGCT GGAACCACCC CGAGCGCGGA CCGGTCTCGC CGGCCCTGTT CATCCCGTTG
GCCGAGGAGA TCGGCGTCAT CGTCGGCATC GGCGAGTGGG TGTTGCGCAC CGCCTGCCGC
GAGGCGGCGC GCTGGCCGCA CCCCGCATCG ATCGCCGTGA ACCTCTCGCC GGTGCAGTTC
CGCGGCGGCC GGCTGGTCGA GACGGTGACG AACGTGCTGG CCCAGACCGG CCTCGACCCG
GCCCGGCTGG AACTGGAGAT CACCGAAGGC GCGCTCCTCG AGAACACCGA CAGCGTGCTC
GACGTGCTGA ACGGCCTGCG CGCGCTCGGC GTGAAGATCT CGATGGACGA TTTCGGCACC
GGCTACTCGT CCTTGAGCTA CCTGCAGAAA TTCCCCTTCG ACAAGATCAA GATCGACCAG
TCCTTCGTCC GCGGCATGGA GGGCAATGCC GAGTGCGGAG CGATCGTGCG AGCCATCGCC
CGGCTCGGCG CCAGCCTCGG CATGCGCACC ACCGCCGAAG GGGTCGAGAC GGCGACGCAG
CTCGACGCCA TCCGCGCCGA GGGCTGCACC GAGGTCCAGG GCTACCTGAC GGGACGCCCG
ATGCCGGCCG CCCAGGCCGC CGCCCTGTTG TCTGCCGCTC CCTCGCCCTC GACCTTGCCC
GCCTGA
 
Protein sequence
MSALAAPSLS IALPFEAALA EMAAPLLLLD AGGSVVFANA HAAALLACTE PVGLPLPALL 
VPFGAAEPEA EPILEAVRAA RPIRVRLTLG GDRRVEAALA PLSAGGFALT FEDVTEQLRG
AALARQEPLT GLCNRVGLHD RLDAALTEAA RTGAPLAVLM LDLDRFKTVN DTLGHPVGDA
LLRKVAERLR RATRSGDLVA RLGGDEFAIL QVDPQVGPHA GVEQPHAAEA LARRLVDLVG
RTYVVDGHML NVGVSVGVAI APADGQNADD LLKHADLALY RAKAAGRGTY RFFEPAMNAQ
MQARRGLEID LRRAMALKQF DLAFQPQIQL ESGDVTGFEA LLRWNHPERG PVSPALFIPL
AEEIGVIVGI GEWVLRTACR EAARWPHPAS IAVNLSPVQF RGGRLVETVT NVLAQTGLDP
ARLELEITEG ALLENTDSVL DVLNGLRALG VKISMDDFGT GYSSLSYLQK FPFDKIKIDQ
SFVRGMEGNA ECGAIVRAIA RLGASLGMRT TAEGVETATQ LDAIRAEGCT EVQGYLTGRP
MPAAQAAALL SAAPSPSTLP A