| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4019 |
|---|
| Symbol | |
|---|
| ID | 5832825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 4469347 |
|---|
| End bp | 4470450 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641369810 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001641460 |
|---|
| Protein GI | 163853417 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.612389 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCCGGC GGCTCCTGCT GGGAGGGCTC GCCGCCCTCC CCTTCCTCCT CTGCGCGACC
GGCGGGGTGC GGGCCGAGGA GCGGGTCGTC AACATCTACA ACTGGTCGGA CTACATCGAC
CCGAAGGTGC TCGACGACTT CACCAAGGAG ACGGGGATCA AGGTCGTCTA CGACACCTAC
GACAACAACG AGATCCTCGA GACGAAGCTC CTGGCCGGCA AGTCCGGCTA CGACATCGTC
GTGCCCTCCG GCCCCTTCCT TCAGCGCCTG ATCAAGGCGG GCGTGTTCCT GCCGCTCGAC
AAGGCGAAGA TCCCGAACCT CAAACACGCT TGGCCCGAGA TCAGCACCCG GCTCCAGGCC
TATGATCCGG GCAACGCGTT CGCCGTCGAT TACATGTGGG GCACCACCGG CATCGGTGTG
AACGTCTCGG CCGTGCGCGA GCGGCTGGGC GCCAACGCCC CCCTCAATAG CTGGAGCCTC
GTGCTCAATC CCGGCTCGAT CGCGAAGCTG AAGGATTGCG GGGTGATGCT CCTCGACTCC
CCCGAGGATC TGATTCCCTC GATCCTACCC TTCTACGGCT TCAAGTCGGA TTCGAAGCGT
TGGGACGACA TCACCGCGGT GACCGACGCG CTCTACAAGG TCCGCGGCGC GGTGCGGAAG
TTCCACTCCT CGGAATACGT CAATGGGCTC GCCAACGGCG ACGTCTGCCT CGCGGTCGGC
TATTCCGGCG ACGTGATGCA GGCGAAGAAG CGCGCCGAGG AATCGAAGAA CGGCATCGAG
ATCGCCTACT TCATCCCGAA GGAAGGTGCG CTGATGTGGT TCGACGCCTT CGCGATCCCG
AAGGATGCCG CCCACCCGGC CGAAGCGCAT GCCTTCATCG ACTACATGAT GCGCCCCGAA
GTGGCGGCGG CCAACACCAA CTTCGTCTCC TTCGCCAACG GCAACCTCGC CGCGCGCAAG
CTCGTGAAGC CGGAGCTTCT CAATAATCCC GGCATCTACC CCGACGAGAC GACGATGCAG
CGGCTCTCGG TCAACACCGC CTGGAACGAC TCGACCCAGC GCTTCGTCAC CCGAGCCTGG
ACGCGGGTGC GCACCGGCCG CTAG
|
|---|
| Protein sequence | MIRRLLLGGL AALPFLLCAT GGVRAEERVV NIYNWSDYID PKVLDDFTKE TGIKVVYDTY
DNNEILETKL LAGKSGYDIV VPSGPFLQRL IKAGVFLPLD KAKIPNLKHA WPEISTRLQA
YDPGNAFAVD YMWGTTGIGV NVSAVRERLG ANAPLNSWSL VLNPGSIAKL KDCGVMLLDS
PEDLIPSILP FYGFKSDSKR WDDITAVTDA LYKVRGAVRK FHSSEYVNGL ANGDVCLAVG
YSGDVMQAKK RAEESKNGIE IAYFIPKEGA LMWFDAFAIP KDAAHPAEAH AFIDYMMRPE
VAAANTNFVS FANGNLAARK LVKPELLNNP GIYPDETTMQ RLSVNTAWND STQRFVTRAW
TRVRTGR
|
|---|
| |