| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4017 |
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| Symbol | rpoB |
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| ID | 5832360 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | + |
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| Start bp | 4460587 |
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| End bp | 4464717 |
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| Gene Length | 4131 bp |
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| Protein Length | 1376 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641369808 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001641458 |
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| Protein GI | 163853415 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.563725 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAATA CGCTGGTCGG TCGCAAGCGC ATTCGCAAGT TCTTCGGTAA GATCCGGGAA
GTCGCCGAGA TGCCGAACCT CATCGAGGTT CAAAAGGCGT CCTACGACCA GTTCCTGATG
GTGGACGAGC CCGAGGGCGG GCGTGCCGAC GAGGGCCTGC AGAGCGTCTT CAAGTCGGTC
TTCCCGATCT CCGACTTCGC CTCGACGGCG CTGCTCGAGT TCGTGCGGTA CACCTTCGAA
CAGCCGAAAT ACGACGTCGA CGAGTGCCGC CAGCGCGGCA TCACCTTCGC GGCCCCGCTC
AAGGTGACGC TGCGGCTCAT CGTGTTCGAT GTGGACCCCG ATACCGGCGC CAAGTCGGTC
AAGGACATCA AGGAGCAGGA TGTCTACATG GGCGACATGC CGCTCATGAC GGACAACGGC
ACCTTCATCG TCAACGGCAC CGAGCGCGTC ATCGTCTCGC AGATGCACCG CTCGCCGGGC
GTGTTCTTCG ACCACGACAA GGGCAAGACC CACTCGTCCG GCAAGCTGCT GTTCGCCGCC
CGCATCATCC CCTACCGGGG CTCCTGGCTC GACGTCGAGT TCGACGCCAA GGACATCGTG
CACGTGCGTA TCGACCGCAA GCGCAAGCTG CCGGTCACCT CGCTGCTGTT CGCGCTCGGC
CTCGACGGCG AAGAGATCCT CTCGACCTTC TACAACCGCG TCGCCTACCA GCGTGACGGG
GCGGATTGGC GCGTGCCGTT CGACGCCGAG CGCCTCAAGG GATTCAAGGC CTCGGTCGAT
CTCATCGACG CCGATTCCGG CGAGGTCGTG CTGGAGGCGG GCAAGAAGCT CAACGCCCGC
AACGCGCGTC TGATCGGCGA GAAGGGCACC AAGTTCCTGC GCGCCGCGGA CGAGGATCTG
ATCGGCCAGT ACATCGCCGA AGACCTCGTC AACATGAAGA CGGGCGAGAT CTGGGCCGAG
GCCGGCGACG AGATCTCCGA GAAGCTCCTC AAGAGCCTCG ACGACGTCGG CGTCACCGAG
CTGCCCGTGC TCGACATCGA CCACGTCAAT GTCGGCCCCT ACATCCGCAA CACGCTGGCG
GTGGACAAGA ACTCCGCCCG CGAGGGCGCG CTGTTCGACA TCTACCGCGT CATGCGCCCC
GGCGAGCCGC CGACGCTCGA CACCGCTGAG GCGATGTTCC ACTCGCTGTT CTTCGATTCC
GAGCGCTACG ACCTCTCGGC GGTCGGCCGC GTGAAGATGA ACATGCGCCT CGACCTCGAC
GCCGCCGACA CCGTGCGGAC GCTGCGTCGC GAGGACATGC TCGCGGTCGT CAAGGCGCTG
GTCGACCTGC GCGACGGCAA GGGCGAGATC GACGACATCG ACCACCTCGG CAACCGCCGT
GTCCGCTCGG TCGGCGAGCT GATGGAGAAC CAGTACCGTC TGGGCCTCCT GCGGATGGAG
CGCGCCATCA AGGAGCGCAT GTCCTCGGTC GATATCGACA CGGTGATGCC GCAGGATCTC
ATCAACGCGA AGCCCGCCGC GGCCGCGGTG CGCGAGTTCT TCGGCTCGTC GCAGCTCTCG
CAGTTCATGG ACCAGACCAA CCCGCTGTCG GAAGTGACGC ACAAGCGCCG CCTCTCGGCG
CTTGGCCCGG GCGGTCTGAC CCGCGAGCGC GCCGGCTTCG AGGTGCGCGA CGTGCACCCG
ACCCATTACG GCCGCATCTG CCCGATCGAG ACCCCGGAAG GCCCGAACAT CGGCCTGATC
AACTCGCTGG CGACCTTCGC CCGCGTGAAC AAGTACGGCT TCATCGAGAC GCCGTTCCGC
CGGGTGAAGG ACGGCGTGGT GACCGACGAG GTCGCCTACC TCTCCGCCAT GGAAGAGGCG
AAGTACTACG TCGCCCAGGC CAATGCCGGC ATGGACGAGG GCCGCAAGCT GACGGACGAC
CTCGTGGTCT GCCGCCGCGC GGGTGAGGTC ATCGTGGTCG CCCCCGACCG CGTCGATCTT
ATGGACGTGT CGCCGAAGCA GCTCGTCTCG GTCGCCGCGG CGCTGATCCC GTTCCTCGAG
AACGACGACG CCAACCGCGC GCTGATGGGC TCGAACATGC AGCGCCAGGC GGTGCCGCTG
GTTCGCGCCG ACGCGCCCTT CGTCGGCACC GGCATGGAGG CCGTGGTCGC CCGCGACTCG
GGTGCCGCCA TCGCCGCCCG TCGCTCCGGC ATCGTCGATC AGGTGGACGC CACCCGTATC
GTCATCCGCG CCTCGGAAGA GACCGACCCG ACCAAGCCCG GCGTCGACAT CTACCGCCTG
CAGAAGTTCC AGCGCTCCAA CCAGTCGACC TGCATCACGC AGAAGCCGCT GGTGCGCGTC
GGCGAGCCGG TGAAGAAGGG CGAGATCATC GCCGACGGTC CCTCGACCGA GTTCGGTGAG
CTCGCGCTCG GCCGCAACGT GCTCGTCGCG TTCATGCCGT GGAACGGCTA CAACTTCGAG
GACTCGATCC TGCTCTCCGA GCGGATCGTG AAGGATGACG TGTTCACCTC GATCCACATC
GAGGAATTCG AGGTGATGGC CCGCGACACC AAGCTGGGTC CGGAGGAGAT CACCCGCGAC
ATCCCGAACG TCTCGGAAGA GGCGCTCAAG AACCTCGACG AGGCCGGCAT CGTCTATATC
GGCGCCGAGG TGCATGCCGG CGACATCCTC GTCGGCAAGA TCACGCCGAA GGGTGAGAGC
CCGATGACGC CGGAGGAGAA GCTCCTGCGC GCCATCTTCG GCGAGAAGGC CTCGGACGTG
CGCGACACCT CGCTCCGGGT TCCCCCGGGC GTGACCGGCA CGATCGTCGA GGTGCGGGTG
TTCAACCGCC ACGGCGTCGA CAAGGACGAG CGCGCCCAGG CGATCGAGCG TGAGGAGATC
GAGCGTCTCG CCAAGGACCG CGACGACGAG CAGACCATCC TCGACCGCAA CACCTATGCC
CGCTTGGCCG AGGTGCTGAT CGGTCAGTCG CCGATCGCCG GCCCGAAGGG CTTCCGCAAG
GACACCACGC TGACCCGCGA GATCATCAGC GAGTATCCCC GCTCGCAATG GTGGCAGTTT
GCCGTCGTCG ACGACCGTAT GATGACGGAA ATCGAGGCGA TGCAGAAGCA GTACGACGAG
TCGAAGAAGC GCCTCGAGCA GCGCTTCCTC GACAAGGTCG AGAAGCTGCA GCGCGGCGAC
GAGCTTCCGC CCGGCGTCAT GAAGATGGTC AAGGTCTTCG TGGCGGTGAA GCGCAAGATC
CAGCCCGGCG ACAAGATGGC CGGCCGCCAC GGCAACAAGG GTGTCGTGTC GCGCATCGTG
CCGATCGAGG ACATGCCGTT CCTCGAAGAC GGCACGCATG CCGACATCGT GCTCAACCCG
CTCGGCGTGC CCTCGCGCAT GAATGTCGGC CAGATCCTGG AAACCCATCT GGGCTGGGCG
GCTGCGGGCT TGGGTCGCAA GGTCTCCAAG GCGGTCGATG CCTATCTGAA GAACCAGGAT
ATCGCGCCGC TGCGGGCTGA GATGGAAGCG ATCTACTCGC CGTCCGAACT CGAGGGGCTG
TCCGACGAGG CTCTGGCCGA GGCGGGCAAC AACGTGCGCC GCGGCGTGCC GATGGCCACC
CCGGTGTTCA ACGGCGCCAA GGAAGCCGAC ATCGAGACGA TGCTGGAGAT GGCCGGGCTC
GACCGCTCGG CGCAGTCGAC GCTCTACGAC GGGCGCACCG GCGAGCCCTT CGACCGCAAG
GTCACCATGG GCTACATCTA CATGCTGAAG CTGCACCACC TCGTGGACGA CAAGATCCAC
GCGCGCTCGA TCGGCCCGTA CTCGCTCGTC ACCCAGCAGC CGCTGGGCGG TAAGGCGCAG
TTCGGCGGTC AGCGCTTCGG TGAGATGGAG GTCTGGGCGC TGGAGGCCTA CGGCGCGGCC
TACACGCTGC AGGAGATGCT CACGGTGAAG TCGGACGACG TGGCCGGCCG CACCAAGGTC
TACGAGGCGA TCGTCCGCGG CGACGACACG TTCGAGGCTG GCATCCCCGA GTCCTTCAAC
GTGCTCGTCA AGGAGATGCG CTCGCTCGGC CTCAACGTCG AGCTCACCTC CTCCAAGCAG
CAGCAGGCGG CCAACGACCA GATCGAGCCG CCGGCCGACG CCGCCGAGTA A
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| Protein sequence | MANTLVGRKR IRKFFGKIRE VAEMPNLIEV QKASYDQFLM VDEPEGGRAD EGLQSVFKSV
FPISDFASTA LLEFVRYTFE QPKYDVDECR QRGITFAAPL KVTLRLIVFD VDPDTGAKSV
KDIKEQDVYM GDMPLMTDNG TFIVNGTERV IVSQMHRSPG VFFDHDKGKT HSSGKLLFAA
RIIPYRGSWL DVEFDAKDIV HVRIDRKRKL PVTSLLFALG LDGEEILSTF YNRVAYQRDG
ADWRVPFDAE RLKGFKASVD LIDADSGEVV LEAGKKLNAR NARLIGEKGT KFLRAADEDL
IGQYIAEDLV NMKTGEIWAE AGDEISEKLL KSLDDVGVTE LPVLDIDHVN VGPYIRNTLA
VDKNSAREGA LFDIYRVMRP GEPPTLDTAE AMFHSLFFDS ERYDLSAVGR VKMNMRLDLD
AADTVRTLRR EDMLAVVKAL VDLRDGKGEI DDIDHLGNRR VRSVGELMEN QYRLGLLRME
RAIKERMSSV DIDTVMPQDL INAKPAAAAV REFFGSSQLS QFMDQTNPLS EVTHKRRLSA
LGPGGLTRER AGFEVRDVHP THYGRICPIE TPEGPNIGLI NSLATFARVN KYGFIETPFR
RVKDGVVTDE VAYLSAMEEA KYYVAQANAG MDEGRKLTDD LVVCRRAGEV IVVAPDRVDL
MDVSPKQLVS VAAALIPFLE NDDANRALMG SNMQRQAVPL VRADAPFVGT GMEAVVARDS
GAAIAARRSG IVDQVDATRI VIRASEETDP TKPGVDIYRL QKFQRSNQST CITQKPLVRV
GEPVKKGEII ADGPSTEFGE LALGRNVLVA FMPWNGYNFE DSILLSERIV KDDVFTSIHI
EEFEVMARDT KLGPEEITRD IPNVSEEALK NLDEAGIVYI GAEVHAGDIL VGKITPKGES
PMTPEEKLLR AIFGEKASDV RDTSLRVPPG VTGTIVEVRV FNRHGVDKDE RAQAIEREEI
ERLAKDRDDE QTILDRNTYA RLAEVLIGQS PIAGPKGFRK DTTLTREIIS EYPRSQWWQF
AVVDDRMMTE IEAMQKQYDE SKKRLEQRFL DKVEKLQRGD ELPPGVMKMV KVFVAVKRKI
QPGDKMAGRH GNKGVVSRIV PIEDMPFLED GTHADIVLNP LGVPSRMNVG QILETHLGWA
AAGLGRKVSK AVDAYLKNQD IAPLRAEMEA IYSPSELEGL SDEALAEAGN NVRRGVPMAT
PVFNGAKEAD IETMLEMAGL DRSAQSTLYD GRTGEPFDRK VTMGYIYMLK LHHLVDDKIH
ARSIGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAA YTLQEMLTVK SDDVAGRTKV
YEAIVRGDDT FEAGIPESFN VLVKEMRSLG LNVELTSSKQ QQAANDQIEP PADAAE
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