Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mext_4011 |
Symbol | |
ID | 5831492 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium extorquens PA1 |
Kingdom | Bacteria |
Replicon accession | NC_010172 |
Strand | + |
Start bp | 4452025 |
End bp | 4454478 |
Gene Length | 2454 bp |
Protein Length | 817 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641369803 |
Product | diguanylate cyclase |
Protein accession | YP_001641453 |
Protein GI | 163853410 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.237804 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAAAA TCGTCGCCTG TGTCGCGAGC CAGCACGATT TCGGCCTTGT TGCCGTTTCG GCCGGGATCT GTCTGCTCGG CTGCTTCTCC ACCGTCACCC TGATGGCCGA GGCCGCCAGG GCCGAGCGTC GGTCCGTTTC CCGCTGGTTG ATCGCGGCGG CGTTCGTGTT CGGCTGCAGC GTCTGGTCGC TGCACTTCGT GGCGATGCTG GCGTTTCAGC CGGGTGCGCA GGCGGCCTAC GGCCTTCTTC CCACCGCAGC CTCGATCGGG ATTGCAGTCG CCGGGGCGCT GATCGCTTTC CTGATCTGGT GCCGGGCGGA CCACGACCCG CTCAAGGTGG CGGCGGCCGG CTTGGTGCTG GCAACGGCGA TTTCGGGCAT GCACTACGCG GGTGTGGGCG CGATGGCGGC CAACAGCCTG CTCGCCTTCG AGGAGGCGCT TGTCCACGCT TCGCTCGGGC TCTGCGCGAC CCTTGCGGTG ATCGCCCTCG CCCGGGCCGG CGATCTCGCC GGGCTCGGCC GCCGCATCGA GGTCAGCCTG TGGCTGGCGC TCGCGATCTG CGGCCTGCAC TTCACCGGCA TGACGGCGCT CACTGTCGCG CCCGCCGCCC CGGTGGCGGG GGGCGGGGCC GTCCTCGGTT CGACGCAGCT CGGCCTCGCG GTGGGGCTCG TCAGCCTCGC CGTCCTCGCT GCCGGGCTCA CGGCGCTGCT GATGCAGCAG CATCTCATGC GCCGCCGCAT GGACGAGCTG AGCCGCATGC GCCTGCTCGG CAACCTCGCC CACGAGGTGC TGTTCATCCA CCGCGAGGGC CGGGTGGTCG AGATCAATCA GGCGGGCCTG CGCCTGTTCG GCGCCCCGGC CTCCGAGATC ATCGGCCGGC CGCTGCTCGA CCTGTTCGCG GAGGCCGACG CTCCGGTTCT GCTGCGGCGC AGCCGGTGCC ATCCGGAGGA TCTGTTCCCG GAGGAGTTCG AGGTCCGCAC CGCCGCCGGC ATCGCCGTGC CGGTGGAACT CACCTGCCGC GCCATCGACT ATCTCGGCCG GCCCGCCACG GCGGTGGCCC TGCGCGACCT CAGCCGGCGC CGCCGCGACG AGGCGCGCAT CCGCCACCTC GCCCTGCACG ACGCCCTGAC CGACCTGCCC AACCGCACCC TGCTGGAGGA GCGCCTGGGG CTCGCCCTGG AGAATGCGGC CGAGAACGGG ACGAGCGTGG CCCTGGCCTA TCTCGACCTC GACCGGTTCA AGCCCGTCAA CGACTTTCAC GGCCACGCCG CCGGCGACGC CCTGCTGGTC CAGGCGGCCA AGCGCATGCT GGCCGAGCTG CGCCCGACCG ACACCCTCGC CCGGATCGGC GGCGACGAGT TCGTCATCGT GCTGGCCCAT ACCCGCACCC TCGCGCAGGT CGCCGAGACC GCCGAGCGTC TGGTCGCGGC GCTCGGCCGC CCGTTCCAGA TCGAGGGCCA GATCGGGGGC TCGGTCGAGG GCTTGCGCGT CGAGATCGGC GCCTCGGTCG GCATTGCTCT CTATCCCAGC GACGGCAGCA CCGCCGAGAG CTTGAAGCGC GCCGCCGACA CCGCCCTGTA CCGGGTCAAG GATGAGGGCC GCGGCGCGGT GCGCTTCTTC GAGGCCGCGA TGGACGAGCA GCTCCAAGCG CGCCGCCGGG TCGAGCACGA GCTGAGCGGG GCGATCGCGC GGGGCGAATT GGCCCTCGAC TACCAGCCGA TCGTCAACGG ACGCACCGGC GAGATCGAGA TCTTCGAGGC GCTGATCCGC TGGCACCACC CGGAGCGCGG CTGCGTGTTC CCGGCGGACT TCATCCCGCT CGCCGAACAG ACGGACCAGA TCGGGCGGAT CGGCGCCTGG GTGCTCGACA CCGCCTGCGC CGCCGCCGCA GCCTGGCCGC ATCCCTGGCG GGTCTCGGTC AACGTTTCGC CGAAGCAGTT CCGCCAGCCG GGCTTCGCCG CCGGCGTGGC GGCGGTCCTC GGCCGCCACG GGCTCTCACC GGGGCGGCTG GTTCTGGAGA TCACCGAGAG CGTGTTCATC CACGACGCAG CGACGGCGCT GACGGTGCTC ACGGCGCTCC GCACCCTCGG CGTGCGCCTC GCGCTGGACG ATTTCGGCAC GGGTTATTCG AGCCTGAGCT ACCTGCAGCG GTTCCAGTTC GACAAGATCA AGGTCGATCG GTCCTTCGTG CGCGGCCTCG GGCAGCACGC GGACGCCCTG ACGATCGTGC GCGCGATCAC CCATCTCGGG CACAATCTCG GCCTCACGGT CACGGTCGAG GGGGTGGAGA CGCAAGAGCA GCTCACGGTT CTGCGTGAAC TCGGCTGCGA CCAGATGCAG GGCTACCTGT TCGCCCGGCC CGCTCCGATG ACCAACCTGT CGGAGACTGG CCCTTCGGAT CGGGCGCGGC TGCGGGCCTT GTTCTCGAAC GAGGCCGCCC GGGCCTACGC GTGA
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Protein sequence | MLKIVACVAS QHDFGLVAVS AGICLLGCFS TVTLMAEAAR AERRSVSRWL IAAAFVFGCS VWSLHFVAML AFQPGAQAAY GLLPTAASIG IAVAGALIAF LIWCRADHDP LKVAAAGLVL ATAISGMHYA GVGAMAANSL LAFEEALVHA SLGLCATLAV IALARAGDLA GLGRRIEVSL WLALAICGLH FTGMTALTVA PAAPVAGGGA VLGSTQLGLA VGLVSLAVLA AGLTALLMQQ HLMRRRMDEL SRMRLLGNLA HEVLFIHREG RVVEINQAGL RLFGAPASEI IGRPLLDLFA EADAPVLLRR SRCHPEDLFP EEFEVRTAAG IAVPVELTCR AIDYLGRPAT AVALRDLSRR RRDEARIRHL ALHDALTDLP NRTLLEERLG LALENAAENG TSVALAYLDL DRFKPVNDFH GHAAGDALLV QAAKRMLAEL RPTDTLARIG GDEFVIVLAH TRTLAQVAET AERLVAALGR PFQIEGQIGG SVEGLRVEIG ASVGIALYPS DGSTAESLKR AADTALYRVK DEGRGAVRFF EAAMDEQLQA RRRVEHELSG AIARGELALD YQPIVNGRTG EIEIFEALIR WHHPERGCVF PADFIPLAEQ TDQIGRIGAW VLDTACAAAA AWPHPWRVSV NVSPKQFRQP GFAAGVAAVL GRHGLSPGRL VLEITESVFI HDAATALTVL TALRTLGVRL ALDDFGTGYS SLSYLQRFQF DKIKVDRSFV RGLGQHADAL TIVRAITHLG HNLGLTVTVE GVETQEQLTV LRELGCDQMQ GYLFARPAPM TNLSETGPSD RARLRALFSN EAARAYA
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