| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4005 |
|---|
| Symbol | |
|---|
| ID | 5832789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 4444449 |
|---|
| End bp | 4446293 |
|---|
| Gene Length | 1845 bp |
|---|
| Protein Length | 614 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641369797 |
|---|
| Product | aspartyl-tRNA synthetase |
|---|
| Protein accession | YP_001641447 |
|---|
| Protein GI | 163853404 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0173] Aspartyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.70537 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCCGG CTCATTCTCA AGAGCCCGCC ATGCACCGTT ACCGTACCCA TACCTGCGGG
GCGATCCGCC CGTCCGATGT CGGGCAGACC GTCCGCCTGT CCGGCTGGTG CCACCGCATC
CGCGACCATG GCGGCGTGCT CTTCATCGAC CTGCGCGACC ATTACGGCCT GACGCAATGC
GTGATCGATT CCGACTCGAA GGCCTTCAAG GCGGCCGAGA CCGCCCGCTC CGAGTGGGTG
ATCCGCATCG ATGGCCGCGT GCGCACGCGG CCCGCCGGCA CCGAGAACGC GGAGCTGCCG
ACCGGTAGCG TCGAGGTCTA TATCGACGAT CTCGAAGTGC TCGGGCCCGC GGGCGAGCTG
CCGCTGCCCG TCTTCGGCGA CCAGGAATAC CCGGAAGAGA CCCGGCTCAA GTACCGCTTC
CTCGATCTGC GCCGGGAGAA GCTGCACGCC AACATCATGA AGCGCGGCGC GATCGTGGAT
TCGCTCCGCC GCCGCATGCG CGAGGGCGGG TTCTTCGAGT TCCAGACGCC GATTCTGACC
GCGTCGAGCC CCGAGGGCGC GCGCGACTAC CTCGTGCCGT CTCGCGTGCA TCCGGGCAAG
TTCTACGCGC TGCCGCAGGC GCCGCAGCAG TTCAAGCAGC TCACGATGAT CGCGGGCTTC
GATCGCTACT TCCAGATCGC GCCCTGCTTC CGCGACGAGG ATGCCCGCGC CGACCGCTCC
CCGGGCGAGT TCTACCAGCT CGACATCGAG ATGAGCTTCG TCACGCAGGA GGACGTGTTC
CAGGCGGTGG AGCCGGTGCT GCGCGGCGTG TTCGAGGAAT TCGCCGGCGG CAAGCGCGTG
ACGAAGGAAT TCCCGCGCAT CACCTACGCC GACGCGATGC TGAAATACGG CGTCGACAAG
CCGGACCTGC GCAACCCGCT AATCATCGCC GACGTGACCG ACGAGTTCGC CGACGACGCG
GTGGAGTTCA AGGCGTTCAA GGGCGTCATC AAGTCGGGCG GCGTGGTGCG CGCCATCCCC
GCCACCGGCG CCGCCGGCCA GCCGCGCTCG TTCTTCGACA AGCTCAACGA CTGGGCCCGC
TCGGAAGGCG CGCCGGGGCT CGGCTACATC GTGTTCGAGG AAGAGGGCGG GGCGCTCACC
GGCAAGGGGC CGATCGCCAA GTTCATCCCC GCCGCCATCC AGGCGCGGAT TGCCGAGAAG
GCCGGCGCCA AGGCGGGCGA CGCGGTGTTC TTCGCCGCCG GCACCGAGGC GAAGGCGGCC
GGGCTCGCGG GCAAGGCGCG CATCCGCATC GGCGACGAGC TGAAGCTCTC CGACACGGAC
CAGTTCGCCT TCTGCTGGGT CGTCGATTTC CCGATGTACG AGTGGAACGA AGAAGACAAG
AAAATCGACT TCTCCCACAA CCCGTTCTCG ATGCCGAACT TCGACCGGGA CGAGTTCCTC
GCCCTGGGCG AGGCGGATTC CGAAAAGATC CTTGAGATCA AGGCGTTCCA GTACGACATC
GTCTGCAACG GCATCGAGCT GTCCTCGGGC GCGATCCGGA ACCACCGCCC CGACGTGATG
GAGAAGGCGT TCGCCATCGC CGGCTACGGC CGGGACGTGC TGGAGGAGAA GTTCGGCGGC
ATGCTGAACG CCCTGCGCCT CGGCGCCCCG CCGCACGGTG GCATTGCGCC GGGTGTCGAC
CGCATCGTCA TGCTGCTCTG CGAGGAGCCG AACATCCGCG AGGTCGTGCT GTTCCCGATG
AACCAGCGCG CCGAGGATCT GATGATGGGC GCGCCCGCCG AGGCGACCCC GAAGCAGCTG
CGCGAGCTGC ACATCCGGCT CAACCTGCCC GAGAAGAAGG CGTAG
|
|---|
| Protein sequence | MVPAHSQEPA MHRYRTHTCG AIRPSDVGQT VRLSGWCHRI RDHGGVLFID LRDHYGLTQC
VIDSDSKAFK AAETARSEWV IRIDGRVRTR PAGTENAELP TGSVEVYIDD LEVLGPAGEL
PLPVFGDQEY PEETRLKYRF LDLRREKLHA NIMKRGAIVD SLRRRMREGG FFEFQTPILT
ASSPEGARDY LVPSRVHPGK FYALPQAPQQ FKQLTMIAGF DRYFQIAPCF RDEDARADRS
PGEFYQLDIE MSFVTQEDVF QAVEPVLRGV FEEFAGGKRV TKEFPRITYA DAMLKYGVDK
PDLRNPLIIA DVTDEFADDA VEFKAFKGVI KSGGVVRAIP ATGAAGQPRS FFDKLNDWAR
SEGAPGLGYI VFEEEGGALT GKGPIAKFIP AAIQARIAEK AGAKAGDAVF FAAGTEAKAA
GLAGKARIRI GDELKLSDTD QFAFCWVVDF PMYEWNEEDK KIDFSHNPFS MPNFDRDEFL
ALGEADSEKI LEIKAFQYDI VCNGIELSSG AIRNHRPDVM EKAFAIAGYG RDVLEEKFGG
MLNALRLGAP PHGGIAPGVD RIVMLLCEEP NIREVVLFPM NQRAEDLMMG APAEATPKQL
RELHIRLNLP EKKA
|
|---|
| |