Gene Mext_3867 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMext_3867 
Symbol 
ID5833901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium extorquens PA1 
KingdomBacteria 
Replicon accessionNC_010172 
Strand
Start bp4293668 
End bp4295770 
Gene Length2103 bp 
Protein Length700 aa 
Translation table11 
GC content70% 
IMG OID641369657 
Productdiguanylate cyclase 
Protein accessionYP_001641310 
Protein GI163853267 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.200227 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCTGA ACGACCTCGA AGAACTCGCG CGAATCGCCT TCGACTGGCT CTGGGCCACC 
GATGCCGAGG ATCGATTCAG CTACGTCTCC CCAGGCGCCG AGCGTGTGCT GGGCCGCTCT
CCGGCGGAGC TGATCGGGCT CACGCGGTCG GCCCTGGTCT GCGAGGGGGA GGGTGAGAGC
CTTGCCGTCT ACCGCGAGAC GATCACCGCC CGCCGCCCGT TCCGCGACCT GACCTACGTC
TACCGCCATC CCGACGGCAC GCCGCGCTGG TTCGAGATCA GCGGCCGCCC GCATTTCTCG
CCCGAGGGCG ATTTCCTGGG CTATCACGGC GTCGGCAGCG ACGTCACCGA GCAGCACCGG
ACCCGGTGCG CCCTGGTCGA GGCGCACGCC GAACTCAGCG AGCAGAACCG GCGCTTCGAC
GCGGCCCTGG AGAACATGAC GCACGGCCTG TGCATGTTCG ATGCGGAGCA GCGGCTCGTG
GTGTGGAACC GGCGCTACCT GGGGATCTTC GGCCTGCCCG ACGACGCGGT CCATGTCGGC
ATGGGCCAGC GCGCCATCAT CGAGATGCTG GTGGCGCGCG GGTGCTACAA GCGCGGCGCC
ACGGTCGATG CGATCAGCGA GGGCACCCGC ACCTCGCTCA GCGGAGACGG GTCGAAATCG
GTTTTGCGCG AACTCGCCGA CGGGCGGGTC ATCGCCGTGA TCCACCGGCC CATGGCCGAT
GGCGGCGGCT GGGTGGCGAC CTTCGAGGAC ATCACCGAGC GGCGGCGCAA CGAGGCGCGC
ATCATCCACA TGGCCCGCCA CGACGGGCTC ACCGACCTGC CGAACCGCAC CCACCTGCGC
GAGGTCGGCG CCGAATGGCT CGCGGCGTTG CGCACCGCCG CGGAGGCGCC GCTCGCGGTG
CTCTGCCTCG ACCTCGACCG CTTCAAGCCG GTCAACGACA GTTTCGGCCA CGCGGTGGGC
GATGCCCTGC TGCGGGCGGT GGCCGATCGG CTGCGCGGGC ACGTGCGCAG CCACGACGTG
GTGGCCCGGC TCGGCGGCGA CGAATTCGCG GTGCTGTCCC GCGTCGAGGA TGCGGCCGCG
GCCGCGACCC TGGCCGAGCG CCTGATCGAG ACCGTGGCCG CGCCCTACAC CCTCGACGGG
ATCACCGTCG AGATCGGGAT GAGCGCCGGC ATCGCCCTAG CCGAGGGCGA CGTCCCGCAC
GACATCGAGC GCCTCCTCAA GGAGGCCGAC CTCGCCCTCT ACGAGGCGAA GACCGAGGGG
CGCGGCACGG TCCGCCTGTT CGAGCCGCAG ATGGACGAGA CTCTGCGCGA ACGGCTCGGC
CTCGAACGCG AGCTGCGCGA GGCGCTCGCG CAGGACCGGT TCGAACTGCA TTATCAGCCG
CTCGTGGACC TGTCCGACAA CCGCATCACC GGCATGGAGG CGTTGATCCG CTGGCACCAT
CCCGAGCGCG GGCTCGTGAG CCCGGCGGTG TTCATCCCGC TCGCCGAGGA GACCGGCCTG
ATCGTGCCGA TCGGCGAATG GGTGCTGCGC CAAGCCTGCC GGGACGCGGT GGACTGGCCG
GGCGAAATCA GCGTGGCCGT CAATGTCTCG CCGCTGCAAC TGCGCCACCG CGGCTTCATC
CAGAGCGTGC TCGGCGCGCT CGCGGCCAGC GGCCTCAAGG CGAGCCGGCT CGAACTGGAG
ATCACCGAGA ACGTGCTGCT CGACGACACC GAGGCGAACC TCGAAACGCT CCACACCCTG
CGCAAGCTCG GCGTGCGCAT CTCCATGGAC GATTTCGGAA CCGGCTATTC CTCGATCAGC
TACCTGCGCC GCTTCCCCTT CGACAAGATC AAGATCGACC GTTCCTTCGT GCGCGACTGC
GCCGCCGAGT CGGAGGCCGG CGCGATCATC CGCGCCATCG TGAGCCTGGG GGCAAGCCTC
GGCATCACCA CCCTGGTCGA AGGCGTCGAG ACCGAGCCGC AGCTCGCCAC CATCCGGGCC
GAGGGGGCGC AGGAGGTGCA GGGTTACCTG TTCAGTCCGC CCCGCCCGGT TCACGAGATC
GCCGTCCTGC TCGAAGCCGG GACCACGGCC GAGGGCCGGC CCGGGCGGAC GCTGGCAGCC
TGA
 
Protein sequence
MPLNDLEELA RIAFDWLWAT DAEDRFSYVS PGAERVLGRS PAELIGLTRS ALVCEGEGES 
LAVYRETITA RRPFRDLTYV YRHPDGTPRW FEISGRPHFS PEGDFLGYHG VGSDVTEQHR
TRCALVEAHA ELSEQNRRFD AALENMTHGL CMFDAEQRLV VWNRRYLGIF GLPDDAVHVG
MGQRAIIEML VARGCYKRGA TVDAISEGTR TSLSGDGSKS VLRELADGRV IAVIHRPMAD
GGGWVATFED ITERRRNEAR IIHMARHDGL TDLPNRTHLR EVGAEWLAAL RTAAEAPLAV
LCLDLDRFKP VNDSFGHAVG DALLRAVADR LRGHVRSHDV VARLGGDEFA VLSRVEDAAA
AATLAERLIE TVAAPYTLDG ITVEIGMSAG IALAEGDVPH DIERLLKEAD LALYEAKTEG
RGTVRLFEPQ MDETLRERLG LERELREALA QDRFELHYQP LVDLSDNRIT GMEALIRWHH
PERGLVSPAV FIPLAEETGL IVPIGEWVLR QACRDAVDWP GEISVAVNVS PLQLRHRGFI
QSVLGALAAS GLKASRLELE ITENVLLDDT EANLETLHTL RKLGVRISMD DFGTGYSSIS
YLRRFPFDKI KIDRSFVRDC AAESEAGAII RAIVSLGASL GITTLVEGVE TEPQLATIRA
EGAQEVQGYL FSPPRPVHEI AVLLEAGTTA EGRPGRTLAA