| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3832 |
|---|
| Symbol | |
|---|
| ID | 5833503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 4258111 |
|---|
| End bp | 4259448 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641369622 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001641275 |
|---|
| Protein GI | 163853232 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.819797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGTCA ACCCCCCGGA GGCGGACATG ACGATGACCG GCATGTTCAC GCTCCGGGTC
TGGGTGGCCG CCGCAACGCT CTCCGCCGCG TGCCCGCCCG CCATTTCGAC GGCGTTCGCG
CAGGCCGAGC CGACGGGCCC CCCCGTCGTC GGCATCATCG CCGCGCGCAA GGAGCCGATC
ACCCAGACGG AGCAGTTCAT CGGACGCATC GAGGCGAAGC AGCGTGTCGA CATCGTCGCC
CGGGTGACGG CGTTCATCGA GAAGCGGCTC TTCGTCGAGG GCACGGATGT CGAGGAAGGA
GCGCTCCTCT ATCGTCTCGA GCGGGGCCCG TTCCAGGCGG TCGTGGCCGC GCAGAAGGCG
CAGATTGCGC AGGTCGAAGC GCAATTGGAG AACGCGCGTC TCACGACGCA GCGCGCCCGA
ACCCTGCTCG GCGGGCCGGC CGGGCAGCAA TCGACCTACG ACGCGGCCCT CGCGAACGAG
CGGGCCTTGG AGGCGCAGCT CCAAGGCGCA CACGCTCAGC TCGACACGGC GCAGATCAAT
CTCGGTTACA CGGAGATCCG CGCGCCGATT GCGGGCCAGA TCGGGCGCAC GTCTCTGACG
ATCGGCAACG TCGTCGGGCC GGGCTCCGGG GTGCTGACGA CGATCATCAG CCAGGACCCG
ATGTTCGTGA CGTTTCCGGT GCCGGTCCGT GAAGCGATCA ATCTGAGAGC GCGCTATGGG
CCGACGGGCG GATTCGGCGC CGTCCTGATC CGGGCGCAAC TCCCGGACGG CCACTTCTAC
GATCACACCG GGACGCTCGA TTTCGTCAAC AACACCATCG CGACGAACAC GGACACGATC
CTGCTTCGCG GCGTGCTGCC GAACCCTCCG ATCTTCGGTC AAACCCGCAG CTTGCTCACC
CTTCGTGAAC TCACGGATGG CGAGTTCGTG ACCGTGTTCC TCGAGAGCGT CGAGCCGGTC
GAGGTGGTCG CGATTCCTCG CGCCGCCGTC CTGGCCGACC AGCGGGGCAG CTACGTCTAC
GTGATCGGGC AAGACAATAA GGCCGAGGAG CGTCGGATTC AGCTTGGCCA GTCGAGCACG
ACGCTCGCGG CGGTGACGAG CGGCCTCAAG GTCGGAGAGC AGGTCATCGC CGAAGGCTTG
CAGCGGGTCC GCGCGGGCGA GACGGTCTCG CCCAAGCCCG CCGACGCCAT TCTGCAGAGG
ATGATGCGGA ATTCGGCCGT GAACGCGGAC AGCGCGGGAC CGGCTGCGTC CGTTTCGCCG
GCGACCGGAC AAGCTCCGAC CGGAGCCGCC AGTGGCACCG GTCCGAGCGC GAGCGGCAGC
CCGAACAGCC GGCGCTAG
|
|---|
| Protein sequence | MRVNPPEADM TMTGMFTLRV WVAAATLSAA CPPAISTAFA QAEPTGPPVV GIIAARKEPI
TQTEQFIGRI EAKQRVDIVA RVTAFIEKRL FVEGTDVEEG ALLYRLERGP FQAVVAAQKA
QIAQVEAQLE NARLTTQRAR TLLGGPAGQQ STYDAALANE RALEAQLQGA HAQLDTAQIN
LGYTEIRAPI AGQIGRTSLT IGNVVGPGSG VLTTIISQDP MFVTFPVPVR EAINLRARYG
PTGGFGAVLI RAQLPDGHFY DHTGTLDFVN NTIATNTDTI LLRGVLPNPP IFGQTRSLLT
LRELTDGEFV TVFLESVEPV EVVAIPRAAV LADQRGSYVY VIGQDNKAEE RRIQLGQSST
TLAAVTSGLK VGEQVIAEGL QRVRAGETVS PKPADAILQR MMRNSAVNAD SAGPAASVSP
ATGQAPTGAA SGTGPSASGS PNSRR
|
|---|
| |