| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3715 |
|---|
| Symbol | |
|---|
| ID | 5831417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 4112900 |
|---|
| End bp | 4113934 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641369506 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_001641161 |
|---|
| Protein GI | 163853118 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.722931 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCTCCG GCAAGACACT TCTCATCACC GGCGGCACCG GATCGTTCGG CAATGCGGTG
ATCCAGCGCT TCCTGGCTAC GGATATCGGT CAAATACGCG TCTTCAGCCG GGACGAGAAG
AAGCAGGAGG ACATGCGCAT CCTGTTGAGC GATCCGCGTG TCCGCTTCTT TATCGGCGAC
GTGCGCGAGT ACAACTCGAT CGCGCAGGCC GTGAAAGGCG TCGATTACAT CTTCCATGCG
GCAGCGCTGA AGCAGGTGCC CTCCTGCGAG TTCTACCCAA TGGAAGCTGT GCGCACGAAC
ATCCTCGGTG CTGAGAACAC GCTGAACGCG GCGGTGGACA ACGGGGTCGA GCGGATGGTC
GTGCTCTCGA CCGACAAGGC GGTCTACCCG ATCAACGCCA TGGGGCTGTC CAAGGCGATG
ATGGAGAAGC TGACGATCGC CAAGTCGCGC ATCCTGCAGA AGGGCGACAC GATCCTTTGC
GCCACGCGCT ACGGCAACGT CATGGCCTCG CGCGGCTCGG TGATTCCGCT CTTCGTGAAC
CAGATCAAGG AAGGGCGCGA CCTCACCATC ACCGATCCGA CGATGACCCG CTTCCTGATG
TCGCTGGAGG ATTCGGTCGA TCTGGTGCTG TTCGCCTACC AGCGCGGGCG GCAGGGCGAC
ATCTTCGTGC AGAAGGCGCC CGCCTGCACG GTGCAGGATC TGGCCGCAGC CCTGCTGACG
ATCTTCGACG CCAAAAACGA GATCCGGATT ATCGGCACGC GCCACGGCGA GAAACTGTAC
GAATCCCTGG TCTCCCGCGA GGAGATGGCG CGGGCCGAGG ACATGGACGG TTTCTACCGC
GTCCCCGCCG ACGACCGCGA CCTAAACTAC TCGAAGTTCT TCACCTCCGG CGAGACGGCG
ATCTCGGCGG CCGACGACTA TACCTCGCAC AACACGCAGC GGATGAACCA GCAGCAGGTC
ATCGATCTGT TGCTGAAGCT CGACTACATC CAGCAAGCCT TGAAGCCCGC CACGCGGGCC
AGGGCCGCCT CTTAG
|
|---|
| Protein sequence | MFSGKTLLIT GGTGSFGNAV IQRFLATDIG QIRVFSRDEK KQEDMRILLS DPRVRFFIGD
VREYNSIAQA VKGVDYIFHA AALKQVPSCE FYPMEAVRTN ILGAENTLNA AVDNGVERMV
VLSTDKAVYP INAMGLSKAM MEKLTIAKSR ILQKGDTILC ATRYGNVMAS RGSVIPLFVN
QIKEGRDLTI TDPTMTRFLM SLEDSVDLVL FAYQRGRQGD IFVQKAPACT VQDLAAALLT
IFDAKNEIRI IGTRHGEKLY ESLVSREEMA RAEDMDGFYR VPADDRDLNY SKFFTSGETA
ISAADDYTSH NTQRMNQQQV IDLLLKLDYI QQALKPATRA RAAS
|
|---|
| |