Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mext_3602 |
Symbol | sdhA |
ID | 5833615 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium extorquens PA1 |
Kingdom | Bacteria |
Replicon accession | NC_010172 |
Strand | + |
Start bp | 3980536 |
End bp | 3982353 |
Gene Length | 1818 bp |
Protein Length | 605 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641369395 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_001641051 |
Protein GI | 163853008 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.609874 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTCCA ACGGAACGAA CGGCGGCGCG CCCGCCTACG CCATCACCGA CCACACCTTC GACGTGGTGA TCGTCGGCGC CGGCGGCGCG GGTCTGCGCG CCACGGTCGG CTGCTCCCAG GCAGGGCTTC GCACCGCCTG CATCACCAAA GTCTTCCCGA CCCGCTCGCA CACCGTGGCG GCGCAGGGCG GCATCTCCGC CTCGCTCGGC AATATGGGGC CGGACGATTG GCGCTGGCAC ATGTACGACA CCGTGAAGGG TTCGGACTGG CTCGGCGACC AGGACGCGAT CGAGTACCTC GTGCGCAACG CCCCCGCCGC CGTCTACGAA CTCGAGCATT GGGGCGTGCC GTTCTCCCGC ACGGACGAGG GCAAGATCTA TCAGCGTCCG TTCGGCGGCA TGACCACCGA TTACGGCAAG GGCACCGCCC AGCGCACCTG CGCCGCGGCC GACCGCACCG GCCACGCCAT GCTCCACACG CTCTACGGGC AGGCGGTGAA GAACAAGACC CAGTTCTTCA TCGAGTACTT CGCCCTCGAC CTGATCATGG ACGAGGACGG CCGCTGCCGC GGCGTGATGG CGATCGATCA GGCCACCGGC GAGATCCACC GCTTCCGCGC CCAGCAGACC ATCCTCGCCA CCGGCGGCTA CGGCCGCGCC TACTTCTCGG CGACCTCAGC CCATACCTGC ACCGGTGACG GCAACGCCAT GGTGCTGCGC GCCGGCCTGC CGCTGCAGGA CATGGAGTTC GTGCAGTTCC ACCCGACCGG CATCTACGGC GCCGGCTGCC TCATCACGGA GGGCGCGCGC GGCGAGGGCG GCTACCTCAC CAACTCCGAG GGCGAGCGCT TCATGGAGCG CTACGCCCCC TCGGCCAAGG ACCTCGCCTC CCGCGACGTG GTCTCCCGCT CCATGACCAT GGAGATCCGC GACGGCCGCG GCGTGGGCAA GGAAGGCGAC CACATCTTCC TGCATCTCGA CCATCTCGAC CCGAAGATCC TGCACGAGCG CCTGCCGGGC ATCTCGGAGA GCGCAAAGAT CTTCGCGGGC GTGGACGTGA CCAAGGAGCC GATCCCGGTT CTGCCGACGG TCCACTACAA CATGGGCGGC ATCCCGACGA ACTTCCACGG CGAGGTGCTG ACCCTCAAGA ACGGCAACCC CGACACGGTG GTGCCGGGCC TGATGGCGCT CGGCGAGGCG GCCTGCGTCT CGGTGCACGG CGCCAACCGC CTCGGCTCGA ACTCGCTGAT CGACCTCGTG GTGTTCGGCC GCGCCGCGGG TCTGCGCTGC GCCGACATCG TCGAGCCCGA CGCCCGCCAG CCGGAACTGC CGAAGGGCTC GGCCGACAAG GCGCTCTCGC GCCTCGACCG CTTCCGCTAC GCCGACGGCG GCACCCCGAC CGCGCAGTTG CGCGACCGGA TGCAGCGGAC GATGCAGAAC AACTGCGCCG TCTTCCGCAC CGGCGAGGTG CTGGAGGAGG GCAAGGGCCT GATCCACGAG GTCTGGCGCG GCGTCTCCGA CATCGCCATC ACCGACCGTT CGCTGGTGTG GAACACCGAC CTGCTCGAGA CCCTGGAATT CGACAACCTG ATCGGTCAGG CGGTCGTGAC CATGGAATCG GCGGTCAACC GCAAGGAAAG CCGCGGCGCG CATGCCCGCG AGGACTTCCC CGACCGCGAC GACAAGGAGT GGATGAAGCA CACGCTCGCG TGGCTCGACC AATCCAAGCA CGGCGTCGAG ATCGATTACC GCCCGGTCCA CACCTACACG ATGTCGAACG ACATCCAGTA CATCGAGCCG AAGGCGCGGG TGTACTGA
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Protein sequence | MASNGTNGGA PAYAITDHTF DVVIVGAGGA GLRATVGCSQ AGLRTACITK VFPTRSHTVA AQGGISASLG NMGPDDWRWH MYDTVKGSDW LGDQDAIEYL VRNAPAAVYE LEHWGVPFSR TDEGKIYQRP FGGMTTDYGK GTAQRTCAAA DRTGHAMLHT LYGQAVKNKT QFFIEYFALD LIMDEDGRCR GVMAIDQATG EIHRFRAQQT ILATGGYGRA YFSATSAHTC TGDGNAMVLR AGLPLQDMEF VQFHPTGIYG AGCLITEGAR GEGGYLTNSE GERFMERYAP SAKDLASRDV VSRSMTMEIR DGRGVGKEGD HIFLHLDHLD PKILHERLPG ISESAKIFAG VDVTKEPIPV LPTVHYNMGG IPTNFHGEVL TLKNGNPDTV VPGLMALGEA ACVSVHGANR LGSNSLIDLV VFGRAAGLRC ADIVEPDARQ PELPKGSADK ALSRLDRFRY ADGGTPTAQL RDRMQRTMQN NCAVFRTGEV LEEGKGLIHE VWRGVSDIAI TDRSLVWNTD LLETLEFDNL IGQAVVTMES AVNRKESRGA HAREDFPDRD DKEWMKHTLA WLDQSKHGVE IDYRPVHTYT MSNDIQYIEP KARVY
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