Gene Mext_3602 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMext_3602 
SymbolsdhA 
ID5833615 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium extorquens PA1 
KingdomBacteria 
Replicon accessionNC_010172 
Strand
Start bp3980536 
End bp3982353 
Gene Length1818 bp 
Protein Length605 aa 
Translation table11 
GC content68% 
IMG OID641369395 
Productsuccinate dehydrogenase flavoprotein subunit 
Protein accessionYP_001641051 
Protein GI163853008 
COG category[C] Energy production and conversion 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
TIGRFAM ID[TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.609874 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTCCA ACGGAACGAA CGGCGGCGCG CCCGCCTACG CCATCACCGA CCACACCTTC 
GACGTGGTGA TCGTCGGCGC CGGCGGCGCG GGTCTGCGCG CCACGGTCGG CTGCTCCCAG
GCAGGGCTTC GCACCGCCTG CATCACCAAA GTCTTCCCGA CCCGCTCGCA CACCGTGGCG
GCGCAGGGCG GCATCTCCGC CTCGCTCGGC AATATGGGGC CGGACGATTG GCGCTGGCAC
ATGTACGACA CCGTGAAGGG TTCGGACTGG CTCGGCGACC AGGACGCGAT CGAGTACCTC
GTGCGCAACG CCCCCGCCGC CGTCTACGAA CTCGAGCATT GGGGCGTGCC GTTCTCCCGC
ACGGACGAGG GCAAGATCTA TCAGCGTCCG TTCGGCGGCA TGACCACCGA TTACGGCAAG
GGCACCGCCC AGCGCACCTG CGCCGCGGCC GACCGCACCG GCCACGCCAT GCTCCACACG
CTCTACGGGC AGGCGGTGAA GAACAAGACC CAGTTCTTCA TCGAGTACTT CGCCCTCGAC
CTGATCATGG ACGAGGACGG CCGCTGCCGC GGCGTGATGG CGATCGATCA GGCCACCGGC
GAGATCCACC GCTTCCGCGC CCAGCAGACC ATCCTCGCCA CCGGCGGCTA CGGCCGCGCC
TACTTCTCGG CGACCTCAGC CCATACCTGC ACCGGTGACG GCAACGCCAT GGTGCTGCGC
GCCGGCCTGC CGCTGCAGGA CATGGAGTTC GTGCAGTTCC ACCCGACCGG CATCTACGGC
GCCGGCTGCC TCATCACGGA GGGCGCGCGC GGCGAGGGCG GCTACCTCAC CAACTCCGAG
GGCGAGCGCT TCATGGAGCG CTACGCCCCC TCGGCCAAGG ACCTCGCCTC CCGCGACGTG
GTCTCCCGCT CCATGACCAT GGAGATCCGC GACGGCCGCG GCGTGGGCAA GGAAGGCGAC
CACATCTTCC TGCATCTCGA CCATCTCGAC CCGAAGATCC TGCACGAGCG CCTGCCGGGC
ATCTCGGAGA GCGCAAAGAT CTTCGCGGGC GTGGACGTGA CCAAGGAGCC GATCCCGGTT
CTGCCGACGG TCCACTACAA CATGGGCGGC ATCCCGACGA ACTTCCACGG CGAGGTGCTG
ACCCTCAAGA ACGGCAACCC CGACACGGTG GTGCCGGGCC TGATGGCGCT CGGCGAGGCG
GCCTGCGTCT CGGTGCACGG CGCCAACCGC CTCGGCTCGA ACTCGCTGAT CGACCTCGTG
GTGTTCGGCC GCGCCGCGGG TCTGCGCTGC GCCGACATCG TCGAGCCCGA CGCCCGCCAG
CCGGAACTGC CGAAGGGCTC GGCCGACAAG GCGCTCTCGC GCCTCGACCG CTTCCGCTAC
GCCGACGGCG GCACCCCGAC CGCGCAGTTG CGCGACCGGA TGCAGCGGAC GATGCAGAAC
AACTGCGCCG TCTTCCGCAC CGGCGAGGTG CTGGAGGAGG GCAAGGGCCT GATCCACGAG
GTCTGGCGCG GCGTCTCCGA CATCGCCATC ACCGACCGTT CGCTGGTGTG GAACACCGAC
CTGCTCGAGA CCCTGGAATT CGACAACCTG ATCGGTCAGG CGGTCGTGAC CATGGAATCG
GCGGTCAACC GCAAGGAAAG CCGCGGCGCG CATGCCCGCG AGGACTTCCC CGACCGCGAC
GACAAGGAGT GGATGAAGCA CACGCTCGCG TGGCTCGACC AATCCAAGCA CGGCGTCGAG
ATCGATTACC GCCCGGTCCA CACCTACACG ATGTCGAACG ACATCCAGTA CATCGAGCCG
AAGGCGCGGG TGTACTGA
 
Protein sequence
MASNGTNGGA PAYAITDHTF DVVIVGAGGA GLRATVGCSQ AGLRTACITK VFPTRSHTVA 
AQGGISASLG NMGPDDWRWH MYDTVKGSDW LGDQDAIEYL VRNAPAAVYE LEHWGVPFSR
TDEGKIYQRP FGGMTTDYGK GTAQRTCAAA DRTGHAMLHT LYGQAVKNKT QFFIEYFALD
LIMDEDGRCR GVMAIDQATG EIHRFRAQQT ILATGGYGRA YFSATSAHTC TGDGNAMVLR
AGLPLQDMEF VQFHPTGIYG AGCLITEGAR GEGGYLTNSE GERFMERYAP SAKDLASRDV
VSRSMTMEIR DGRGVGKEGD HIFLHLDHLD PKILHERLPG ISESAKIFAG VDVTKEPIPV
LPTVHYNMGG IPTNFHGEVL TLKNGNPDTV VPGLMALGEA ACVSVHGANR LGSNSLIDLV
VFGRAAGLRC ADIVEPDARQ PELPKGSADK ALSRLDRFRY ADGGTPTAQL RDRMQRTMQN
NCAVFRTGEV LEEGKGLIHE VWRGVSDIAI TDRSLVWNTD LLETLEFDNL IGQAVVTMES
AVNRKESRGA HAREDFPDRD DKEWMKHTLA WLDQSKHGVE IDYRPVHTYT MSNDIQYIEP
KARVY