| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3409 |
|---|
| Symbol | |
|---|
| ID | 5831361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 3778850 |
|---|
| End bp | 3779824 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641369208 |
|---|
| Product | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein |
|---|
| Protein accession | YP_001640866 |
|---|
| Protein GI | 163852823 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.932259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTACCC GCACCCGCGC CGTTCCCGCA TCCTCGCTGC TGCCGCGCCT GTGGCTGGCG
CTGGCCGCGC TGATCTTCGT CAGCCTGACG CTGGCGGCAC ACGCGCAGGA GCGCACGGTG
CGGATCGGCT ACCAGAAATA CGGCACCCTG GTCCTGCTCA AGGGCCGCGG CAGCCTGGAG
CCGAAGCTGA AGGCGCTCGG CTACCGGGTG CAGTGGTCGG AGTTTCCCTC GGGCCCGCCG
CTGATGGAAG CGCTGAATGC GGGTGCGGTC GATTTCGGCT CGGCGGGCGA GACCCCGCCG
ATCTTCGCCC AGGCCGCGAG CGACGTGCTC GCTTACGTCG CCCACGAGCC CGCCGCGCCG
AAGGGCGAGG CGATCCTGGT TCCGAAATCC AGTGCCGCGC AATCGGTGGC CGATCTGCGC
GGAAAAAAGG TCGCGCTGAA CAAGGGCTCG AACGTCCACT ACCTGCTGGT GCGCGCCATC
GAGGCGGCGG GCTTGACGCT CGCCGACATC ACCCCGGTCT ACCTCGCGCC CGCCGATGCG
CGGGCGGCGT TCGAGCGCGG CGCAGTCGAT GCCTGGGTGA TCTGGGACCC GTACTTCGCG
GCCGCCGAAG CCGGCGGCAA CGCCCGGGTG CTGGCCGACG GCACCGGCCT CGTGCCGAAC
CACCAGTTCT ATCTCTCCTC CAAGTCCTTC GCCGCCGAGA ACGGCCCGGC GCTCGACGCC
ATCGTCGCGG CGGTGGCCGA GGTCGATGCC TGGGCCAAGG ACAACACCGA TGCGGTGGCC
AAGGAACTGA GCCCCTCCGT CGGCATCCCG GCACCGATCC TGAGCATCGC CCTCAAGCGC
CAGACCTACG GCATCCGCCC CCTCGACGAG GGGGTGACGA AGGAGCAGCA GCGTATCGCC
GACACCTTCC ACGGGCTCAA GCTCGTGCCG AAGACGGTCG ACATCGCCGG CGCCGTGCGC
AAGCCCGGAA GCTAA
|
|---|
| Protein sequence | MLTRTRAVPA SSLLPRLWLA LAALIFVSLT LAAHAQERTV RIGYQKYGTL VLLKGRGSLE
PKLKALGYRV QWSEFPSGPP LMEALNAGAV DFGSAGETPP IFAQAASDVL AYVAHEPAAP
KGEAILVPKS SAAQSVADLR GKKVALNKGS NVHYLLVRAI EAAGLTLADI TPVYLAPADA
RAAFERGAVD AWVIWDPYFA AAEAGGNARV LADGTGLVPN HQFYLSSKSF AAENGPALDA
IVAAVAEVDA WAKDNTDAVA KELSPSVGIP APILSIALKR QTYGIRPLDE GVTKEQQRIA
DTFHGLKLVP KTVDIAGAVR KPGS
|
|---|
| |