| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3354 |
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| Symbol | |
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| ID | 5835236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | - |
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| Start bp | 3717390 |
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| End bp | 3719393 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641369154 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001640812 |
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| Protein GI | 163852769 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.355875 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGCG ATACGCTCGA TTTACTCGAT CAGGAGCTCG GCAAGCGTTG GTTTCAACGC
CGTTCGCCGA TTCTGAATGC CGCTTTCAGG GCGCAATACG CACAGGCGAT GCGCGAAGAG
ATGGGTCGCG CGTGTCAGTT GGTGGGCCTG CTCTACGTCG CGTTCGGCGT GATGGATGCG
CTCCTCATCC GCGACATGCT CCCCTACCTC ATTGCGCTGC GTCTCGTGCT CGGCGTGGGC
TACGTCACTT CGATCATGCT GCAGGTCCGT CGCGGCGCGG ATACGCAGAC CCTCGAACTT
CAGTGCTCAC TCGGCATCTA TGTCGGCTTC GCAGCCTGGC TCTATCTTGC GACCCAGAGC
TCCGATGAAA CAGCGATCCT CTACTATGCC GGATACGGCT TGATCTTCAT GCTGGTCGCG
AACCTGTTTT TCAACCTCAG TTTCAGGTTC GCCCTTCTTT CGTCAGGCCT GATCACCGCG
ACATTCCTGT TCTGGGCCCT CCGTTCGAAT GGCAACTTAT CCTACATTAT CTGCTTTAGT
TCCTTATATA TACTGAGTTT TCTGCTCACG GCGTTCCTCA ATCTCAAGTA CAATCGAGAG
CGGTACCGCG TGCATTTGAA CGCGTGCCGG GCCGAGTTGC AGCAACGTGA GGTCGTCCAA
CGCGGCGAGG AGCTGTTCCG GCTGTCCACG ACCGACGTTC TGACGGGCTT GGCCAACCGC
CGTGCGATCG ACAGCGTCCT GCAGGAACTC TGGCTCGCCA ATGTCAACTC GGGGCAGGCG
TTCGGCGTGA TCCTGATCGA TGTCGATTTC TTCAAGCTCT ACAACGACCG CTACGGGCAT
CAACGGGGCG ATAGCTGCCT CGCCGCTTTG GGCGAGGCGA TGCGCGGCGC TGCCGATAAG
AGGCGGTATG CCATCGGGCG CTTCGGAGGC GAGGAATTCG CAGCACTGTT TCAGGCGGAT
TCAGCTGAAC AGGTTCTCGA ATTCGCTGAG GAGGTTCGTC AAGCCGTCGA GGCGTTGCAG
ATCCCCCATG CAGCGCGGCG TGATCCGCTC TCCCATGTCA CGGTGAGCAT CGGAGCGGCA
TTCTCCGCGG ATGTCGCGGA CGATAAGCCG GAGCGTGCGA TTTCCGCAGC TGACGACGCT
CTCTATGTCG CGAAGGAAGA AGGCCGCAAC CGCGCGCGAA TCTTCAATGC GAGGATGCGC
CATAGCACCG AGAGCGATGA TCTGAATGCG GAGATGCTCC GAGCGGCTGT CACGGACGGG
CGCATATCCG CGGTCTTTCA GCCCATCGTT GATGTCTCAA GCGGACGCAT CTGGGCCGCG
GAGACGCTTA TGCGGCTCAA GGACACGCAA GGCCGTGCGA TCTCCCCGGA AACGTTCATC
CCTGTCGCCG AGCGCACGGG CGCCATTCTT GAGATGGGCG CATGGATCCT GCGCCAGGCC
TGCGACCTTC TCGCGAGCGA GCCCGAACTA CCCATCGTCA GCGTGAACAT CTCCGCACGA
CAAATTTCCG AACCGAACTT CATCAGTTCC GTCGAAGCCA TCGTCCGAGC CGCCGGCATC
GCTCCGTCAC GCCTTGCTCT GGAGATCACC GAGAGCGGGG AGATCAGCGG CAACCCAGAA
GTCGCTCAGT TGATGGACCG GCTCAACACG ATCGGGATCC GCGTTTGGCT GGATGATTTC
GGAACGGGTT TTGCGGGCCT TACCTGCCTG AGTGAACTGC GTTTTGATAT GGTCAAGATC
GACCGCTTCT TTGTGCAGAG CTGTGATACC CCGCGTGGGG CAAAGCTGCT TAAAAACATC
ATCGACTTGG TCAACAATTG CGCTCAGAGG CCGATCGTGG AAGGCGTTGA AGAGGCGTGG
CAGATCGACC TTGTATCCTC CTTCGGAGCG GATCTGTTTC AAGGCTATCA CCTCGGAAGG
CCAATGCCCC GCAGCGAGCT GAAGCTGATG CTTTCTGAGT ATTCGTCTTC AAATGAGAAT
TTAGAAATGC AGCACGGGAG TTGA
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| Protein sequence | MNSDTLDLLD QELGKRWFQR RSPILNAAFR AQYAQAMREE MGRACQLVGL LYVAFGVMDA
LLIRDMLPYL IALRLVLGVG YVTSIMLQVR RGADTQTLEL QCSLGIYVGF AAWLYLATQS
SDETAILYYA GYGLIFMLVA NLFFNLSFRF ALLSSGLITA TFLFWALRSN GNLSYIICFS
SLYILSFLLT AFLNLKYNRE RYRVHLNACR AELQQREVVQ RGEELFRLST TDVLTGLANR
RAIDSVLQEL WLANVNSGQA FGVILIDVDF FKLYNDRYGH QRGDSCLAAL GEAMRGAADK
RRYAIGRFGG EEFAALFQAD SAEQVLEFAE EVRQAVEALQ IPHAARRDPL SHVTVSIGAA
FSADVADDKP ERAISAADDA LYVAKEEGRN RARIFNARMR HSTESDDLNA EMLRAAVTDG
RISAVFQPIV DVSSGRIWAA ETLMRLKDTQ GRAISPETFI PVAERTGAIL EMGAWILRQA
CDLLASEPEL PIVSVNISAR QISEPNFISS VEAIVRAAGI APSRLALEIT ESGEISGNPE
VAQLMDRLNT IGIRVWLDDF GTGFAGLTCL SELRFDMVKI DRFFVQSCDT PRGAKLLKNI
IDLVNNCAQR PIVEGVEEAW QIDLVSSFGA DLFQGYHLGR PMPRSELKLM LSEYSSSNEN
LEMQHGS
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