| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3326 |
|---|
| Symbol | |
|---|
| ID | 5831544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 3684991 |
|---|
| End bp | 3688155 |
|---|
| Gene Length | 3165 bp |
|---|
| Protein Length | 1054 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641369126 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_001640784 |
|---|
| Protein GI | 163852741 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.775486 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGCT TCTTCATCGA CCGGCCGGTC TTCGCCTGGG TCGTCGCCCT GTTCATTCTG
CTCGGCGGCG CGCTCTCGAT CCCGCAACTG CCGATCGCCC AGTATCCGAT CATCGCGCCC
CCCGCGATCG CGCTCTCGAC CTCGTATCCC GGCGCCTCGG TGGAGAATCT CTACACCGGC
ACGACGCGCC TCATCGAGGA CGAGCTCAAC GGCGCGGCCA ACATCCTGAG CTTCGAATCG
GCCTCCGACT CGTTCGGCGT GGTCGAGATC ACTGCAAGCT TCCAGCCCGG CACCGATCCC
GGCTACGCCG GCGTCGAGGT GCAGAACCGC TTGAAGCGCG TCGAGGCGCG CCTGCCGGCC
GAAGTGCGCC AGCAGGGCAT CCTCGTGGAG GAGGCCTCGG CCGCGACGCT GAACATCATC
ACGCTCGTCT CCACCGACGG GAAGACCGAC GAAGTGGGGC TGGGCGACTT CCTGATCCGC
AACGTCATCA ACGAGATCCG CCGCATCCCC GGCGTCGGCC GCGCGACCCT CTACTCGACC
GAGCGGGCGC TGCGGATCTG GATCGACCCG GACAAGCTGC GCGGCCTCTC CCTTAACGCT
GCCGACGTGA CCAAGGCGAT CGGCCGGCAG AACGTGCAGA TCGCCTCGGG TGCCGTCGGC
GCGCAGCCCT CGCCTGAGCG CCACGCCGTC AACTTCCCCA TCATCGTCAA GGGGCAGATG
ACCGAGCCGG AGGCGTTCGG CGCCATCGTG CTGCGGGCCA ATCCCGACGG CTCCAACGTG
CGCCTGCGCG ACGTTGCTCG GATCGAACTC GGCGGCGACG ACTACAAGTT CACCACCCGC
CTCAACGGCG GCCCGGCGGC GGGCATCTCC GTGACGCTGG CACCCGACGG CAACGCCATC
GAGACGGCGA AGGCGATCCG CGCCAAGATG GTGGAGCTGT CGCAGTTCTT CCCCGACACG
GTGAAGTGGG ACATCCCCTA CGACATCACG CCCGCGGTCG ATGCCTCGAT CGAGAAGGTG
CTGCACACGC TGGTCGAGGC GGTGGTGCTG GTCTTCATCG TGATGTTCGT GTTCCTCCAG
AACATCCGCT ACACCCTCAT CCCGACCATC GTCGTGCCGA TCGCCCTGTT CGGCACCTGC
ACCGTCATGC TGCTCGCGGG CTTCTCCGTG AACGTGCTGA CCATGTTCGG AATGGTGCTG
GCCATCGGCA TCCTCGTCGA CGACGCCATC GTCGTCGTCG AGAACGTCGA GCGCATCATG
AACGAGGAGG GCCTGCCCCC GAAGGAGGCG ACCCGGAAGG CGATGAGCCA GATCACGGGG
GCGATCATCG GCATTACCCT GGTGCTGATC GCCGTGTTCA TCCCGATGGC GTTCTTCCCC
GGCTCGGTCG GCATCATCTA CCGGCAGTTC TCGATCGCGA TGGTGACCTC CATCGCCTTC
TCGGCCCTGC TCGCCCTCTC GCTGACCCCG GCACTCTGCG CCACGATGCT GAAGCCGATC
GAGAAGGGGC ACGGCCACGC CAAGGGCGGC GTGTTCGGAT GGTTCAACCG GTTCGTCGAC
CGGGAGACCG CCCGATACGG CCGCGGCGTG GCGTGGTTCA TCCGGAAGTC CGGCCGGGTG
ATGCTGATCT ACCTCGTGCT GGTCGCGGGC GTGGCCTACG CCTTCATGCG CCTGCCCGAG
GGCTTCCTGC CGCTCGAGGA TCAGGGCTTC TTCACCGTCG ATATCCAGAC CCCGCCGGGC
TCCTCCTTCA ACCGCACGGA AGCGGCGGTG AAGAAGGTTG AGGATTATCT CCTGGCCCAG
CCGGGCGTGG CGACGGTCAC CGTCATCAAC GGCTTCTCCT TCTCCGGCCA GGGCCAGATG
ACGAGCCAGG CCTTCGTCAC GCTCAAGCCC TGGAGCGAGC GCGACGCGGC GAACTCCGCC
GCCAAGCTGG TCGAGGGCAC CAACAAGGCG CTCGGGGGCT ACAAGGATGC CGTGATCCAG
GCGCTGGAGC CGCCGCCGAT CGACAACCTC GGCAACGCCT CGGGCTTCTC GTTCCGCCTG
CAGGACCGGG CGCAGAAGGG CTACTCGGCG CTGATGGCGG CCCAGGAGCA GCTGCTCTCG
CTCGCCCGCA AGAGCCCCGT GCTGACGAAG GTCTATGTCG AGGGCCTGCC GCCCGCGCCC
GAGGCCGAAC TCATCATCGA CCGCGAGAAG GCGGCCGCCC TCGGCGTCGA TTTCGAGGAC
ATCAACAACA CGATCCAGGT CAATCTCGGC TCGGTCTACG TCAACGACTT CCCGAATCGC
GGCAAGATGC AGCGCGTGAT CGTGCAGTCC GAGGATCTCC AGCGCCTGCA CGCGGCGGAC
CTGCTGAACT ACTCGGTCAA GAACGCGCAG GGGACGATGG TGCCGATGTC CTCCTTCGCC
GACCTGAAAT GGGGCGTCGG CCCGGCCCAG ATCATCGGCT TCAACGGCTA CCAGTCGGTC
CGCATCACCG GCGATCCGGC CCCCGGCTAC ACCTCCGGCG ACACCATCAA GGAGATGGAG
CGGCTGATGA CCTTCCTGCC GAAGGGCTTC GGCTACGCCT GGACCGGGCA GTCGCTCCAG
GAGAAGGAGG CGGGCTCCCA GGCCTCGCTG CTGTTGGCAC TGTCGGTGCT GATCGTGTTC
CTGTGTCTGG CCGCGCTCTA CGAGAGCTGG TCGATCCCGA TCTCGGTGCT GCTGGTGATC
CCGCTCGGCG TCATCGGCTC GGTGGCGGCG GTGTATCTGC GCGGCATGCC CAACGACGTC
TACTTCAAGA TCGGGCTCAT CACGATCATC GGCCTGTCGG CCAAGAACGC GATCCTGATC
GTGGAGTTCG CCCGCGACCT CTGGAAGCCC GGCACCAACA TCGTCCAGGC GACGATCCAG
GCGGCGACGC TCCGCTTCCG CCCGATCGTG ATGACCTCGC TCGCCTTCAT CTTCGGCGTG
GTGCCGCTGG CGATTGCCAC CGGCGCCTCC TCGAAGAGCC AGCAGGCTAT CGGCACGGGC
GTGATGGGCG GCATGATCTC GGCCACCGTG CTCGCGGTGT TCTTCGTGCC GGTGTTCTTC
GTGGTGGTGA TGCGCCTGTT CAAGCGCAAA GAGGTCGCCG CGGGCGAGAA CGCGGAGGCG
GCGCCTGCTC CGACTCATCA CGGGCACTCG GTGCCGGCGG AGTAG
|
|---|
| Protein sequence | MARFFIDRPV FAWVVALFIL LGGALSIPQL PIAQYPIIAP PAIALSTSYP GASVENLYTG
TTRLIEDELN GAANILSFES ASDSFGVVEI TASFQPGTDP GYAGVEVQNR LKRVEARLPA
EVRQQGILVE EASAATLNII TLVSTDGKTD EVGLGDFLIR NVINEIRRIP GVGRATLYST
ERALRIWIDP DKLRGLSLNA ADVTKAIGRQ NVQIASGAVG AQPSPERHAV NFPIIVKGQM
TEPEAFGAIV LRANPDGSNV RLRDVARIEL GGDDYKFTTR LNGGPAAGIS VTLAPDGNAI
ETAKAIRAKM VELSQFFPDT VKWDIPYDIT PAVDASIEKV LHTLVEAVVL VFIVMFVFLQ
NIRYTLIPTI VVPIALFGTC TVMLLAGFSV NVLTMFGMVL AIGILVDDAI VVVENVERIM
NEEGLPPKEA TRKAMSQITG AIIGITLVLI AVFIPMAFFP GSVGIIYRQF SIAMVTSIAF
SALLALSLTP ALCATMLKPI EKGHGHAKGG VFGWFNRFVD RETARYGRGV AWFIRKSGRV
MLIYLVLVAG VAYAFMRLPE GFLPLEDQGF FTVDIQTPPG SSFNRTEAAV KKVEDYLLAQ
PGVATVTVIN GFSFSGQGQM TSQAFVTLKP WSERDAANSA AKLVEGTNKA LGGYKDAVIQ
ALEPPPIDNL GNASGFSFRL QDRAQKGYSA LMAAQEQLLS LARKSPVLTK VYVEGLPPAP
EAELIIDREK AAALGVDFED INNTIQVNLG SVYVNDFPNR GKMQRVIVQS EDLQRLHAAD
LLNYSVKNAQ GTMVPMSSFA DLKWGVGPAQ IIGFNGYQSV RITGDPAPGY TSGDTIKEME
RLMTFLPKGF GYAWTGQSLQ EKEAGSQASL LLALSVLIVF LCLAALYESW SIPISVLLVI
PLGVIGSVAA VYLRGMPNDV YFKIGLITII GLSAKNAILI VEFARDLWKP GTNIVQATIQ
AATLRFRPIV MTSLAFIFGV VPLAIATGAS SKSQQAIGTG VMGGMISATV LAVFFVPVFF
VVVMRLFKRK EVAAGENAEA APAPTHHGHS VPAE
|
|---|
| |