| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3163 |
|---|
| Symbol | |
|---|
| ID | 5832539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 3514551 |
|---|
| End bp | 3516077 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641368964 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001640622 |
|---|
| Protein GI | 163852579 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0382] 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.147535 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGG CGCATGCGCG AAGGGCGGAG ACGGCCCCCA TCCTGATCGA GGACGCGGCC
TCGGCGTTGC GGCCGGTGCC GCTGGTGATC GACCTCGACG GCACGCTGCT GCGCACGGAT
CTCCTTCTGG AAGGAATCAT CGCGCTGCTG CGGCGCAACC CGCTGATGCT GCTGGTGATG
CTGCTGTGGC TGCCGCGGGG GCGGGCCTTC TTCAAGCGCC GCATCGCGGA AGGCGCCGTG
CTCGACGTCG CGACTCTGCC GGCCAGCGCG GCTTTGCTCG CCCATATCGA GGCGCGGAAG
GCGGCGGGCC AGGAGATCGT GCTCGCCACC GCCGCCGACG AGCTGATGGC CCTGCGCGCC
CTGCGGCGTT TTCCCGTCTT CGACCGGGTG GTGGCGAGCG ACGGGGTACG CAACCTCAAA
GGGGAGGCCA AAGCCGCGCA GCTCCGGGCG CTCTACCCGC AGGGCTTCGA CTATGCGGGC
GATGCCGCAG CCGACCTTCC GGTCTGGGCC GCGGCCCGGC GGGTGATCGT CGTCGGAGCC
TCCGGTTCCG TGCTCCGCGG CGCCCGGCGG CTCGGCAAGC CGGTCGAGGA ATTTCCCGCC
GCCGCGCGTT CGCGCGCATT GCTCAAGGCC CTGCGCCTGC ACCAATGGGC CAAGAACGCC
CTGGTCTTCG TGCCGCTCGT CCTTGGCGGC CGGGCCGGGG ACGCGCAAGC CTGGGGGAGC
GCCGGCCTGG CCTTCCTCGC GCTCGGACTC GTCGCTTCGG CGAGCTACCT GCTGAACGAC
CTGCTCGACC TCTCCCACGA CCGGGCGCAC TGGTCGAAAC GCGAGCGCCC CCTGGCGAGC
GGCCGGCTTC CCATCGCCAC CGGTCTGGCG GTAATCGTGC TCGGCCTCGC GGGCGGGCTG
GCGGTTGCGG CCTGGGCTGG GGCGGCGGTG CTCACCGGCG TGCTCGCCTA TCTCGCCCTG
ACGCTGACCT ACTCCGCTTG GCTGAAGCGG GTGCCGATGC TCGACGCGCT GACGCTCGGG
AGCCTGTTTT CGCTGCGCAT CGCGGTCGGC GTCGCGGCGG TCGCGGTGGC GTGGTCGCCC
TGGCTCCTGA CCTTCTCGAT GTTCCTGTTC ACCTCGCTGT CCTTCGCCAA GCGTCACACG
GAGTTGCGCG GGGCGGCGCG ACGGGGCCAA GCCGGCACCA TCGCCGGGCG CGGTTACGAG
CCGGCGGACG AGCCGGTGGT GCTCGCCTTC GGCATCGCCT CGGGGCTCGC CAGCGTCGTC
ATCTTCATCC TGTATCTCGC CAACGAGGCG TTCCGCCACG CGGCGCTCGC CGCGCCTTTG
TCCCTGTGGA GCTTCCCGCT GATCCTCGTC CTGTTCATGG GCCGGGTCTG GCTGCTGGCG
GGCCGCGACG CGCTCCACGA CGACCCGGTC GCCTTCGCGG TCAGGGACCG CCCGAGCCTC
GTGCTCGCGG GTGTGGCCGG CCTCGCCTTC GCGGTGGCGG CGTTCGGTTT ACCGCCCGGT
CTCCTGCCAC AAGGGTTAGG GCTGTGA
|
|---|
| Protein sequence | MATAHARRAE TAPILIEDAA SALRPVPLVI DLDGTLLRTD LLLEGIIALL RRNPLMLLVM
LLWLPRGRAF FKRRIAEGAV LDVATLPASA ALLAHIEARK AAGQEIVLAT AADELMALRA
LRRFPVFDRV VASDGVRNLK GEAKAAQLRA LYPQGFDYAG DAAADLPVWA AARRVIVVGA
SGSVLRGARR LGKPVEEFPA AARSRALLKA LRLHQWAKNA LVFVPLVLGG RAGDAQAWGS
AGLAFLALGL VASASYLLND LLDLSHDRAH WSKRERPLAS GRLPIATGLA VIVLGLAGGL
AVAAWAGAAV LTGVLAYLAL TLTYSAWLKR VPMLDALTLG SLFSLRIAVG VAAVAVAWSP
WLLTFSMFLF TSLSFAKRHT ELRGAARRGQ AGTIAGRGYE PADEPVVLAF GIASGLASVV
IFILYLANEA FRHAALAAPL SLWSFPLILV LFMGRVWLLA GRDALHDDPV AFAVRDRPSL
VLAGVAGLAF AVAAFGLPPG LLPQGLGL
|
|---|
| |