| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2993 |
|---|
| Symbol | |
|---|
| ID | 5835302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 3342431 |
|---|
| End bp | 3343417 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641368793 |
|---|
| Product | histone deacetylase superfamily protein |
|---|
| Protein accession | YP_001640453 |
|---|
| Protein GI | 163852410 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGAGGC GGGGCGCCCA AAAGGCATCA CCGTCTCGGG CACCGGGAGA AACGGCCCTG
AGCACCCTCT ACGTCACCCA TCCGAGCGCG GTCGAACACG TGGTCCCGAC CGGCCATCCA
GAGCGGCCGG CCCGCATGCA GGCGGTCGAG CGCGCCCTCG AGGACGAGCG CTTCGCCGCC
CTGGTGCGCT GCCACGCCCC GAGGGCGGAG GCTTCGGTCG CCGAACTCGT CCACCCGGCG
TCCTACGTCG AGACCATCGT CGCGGCCTCG CCCGACGAGG GCTTCTTTCA GATCGACGGC
GACACGCTGA TGTCGCCGGG CTCGCTCAAC ACCTGCCTGC ACGCCATCGG CGGGTCGAAC
CACGCCGTCG ATGCGGTGAT GAAGGGCGAG TGCGCCAACG CCTTCGTCGC CATGCGCCCG
CCCGGCCACC ACGCCGAGCG CGACCGCGCC ATGGGCTTCT GCCTGTTCAA CCACGCGGCG
ATCGCCGTGC GCCACGCCCA GAAGGCGTTC GGCGCCACCC GCGTCGCCCT GGTGGATTTC
GACGTCCACC ACGGCAACGG CTCGCAGGAC ATCTTCTGGG CCGACAAGAC GGTGATGTAC
GCCTCGACCC ACCAGATGCC GCTGTTTCCG GGCTCCGGCG CCACGGGTGA GCGGGGCGAC
CACGACACCA TCGTCAACGC GCCGCTCAAG GCGTTCGACG GCAGCGAGTT GTTCCGCGAA
GCCTTCGAGG CGCGCATCCT GCCGCGGCTC GACGCCTTCG CGCCTGACCT GATCGTGATC
TCGGCGGGGT TCGACGCGCA CAAGCTCGAT CCGCTGGCCA ACATCCAGCT CGACGAGGCG
GATTTCGGCT GGGCGACGCG GCGGCTGATG GAGGTCGCCG ACCGCCATGC CGGCGGTCGC
GTCGTGTCGA TCCTGGAGGG TGGCTACAGC CTCGACGGCC TCGCCCGCTC GGTCGCCGCC
CACATGGATG CGCTGATGGG GCGGTGA
|
|---|
| Protein sequence | MTRRGAQKAS PSRAPGETAL STLYVTHPSA VEHVVPTGHP ERPARMQAVE RALEDERFAA
LVRCHAPRAE ASVAELVHPA SYVETIVAAS PDEGFFQIDG DTLMSPGSLN TCLHAIGGSN
HAVDAVMKGE CANAFVAMRP PGHHAERDRA MGFCLFNHAA IAVRHAQKAF GATRVALVDF
DVHHGNGSQD IFWADKTVMY ASTHQMPLFP GSGATGERGD HDTIVNAPLK AFDGSELFRE
AFEARILPRL DAFAPDLIVI SAGFDAHKLD PLANIQLDEA DFGWATRRLM EVADRHAGGR
VVSILEGGYS LDGLARSVAA HMDALMGR
|
|---|
| |