| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2946 |
|---|
| Symbol | ddl |
|---|
| ID | 5831447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 3290659 |
|---|
| End bp | 3291582 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641368746 |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_001640406 |
|---|
| Protein GI | 163852363 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.187089 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAGC ACGTCGCCGT CCTCATGGGC GGCTGGTCTT CCGAGCGGGA AATCTCGCTC
CGCTCCGGCA ATGCCTGCGC CGAGGCGCTG GAAGGGGAGG GGTATCGCGT CACCCGCGTC
AATGTCGGGC CCGACATCGC GACGGTGCTG ACCGAGCTGC GGCCCGACGC GGCGCTCAAC
GCGCTCCACG GCCCGGCCGG CGAGGACGGC ACGATCCAGG GCCTCTTGGA GATCCTGAAG
ATCCCCTACA CCCATTCCGG CGTGCTGGCC TCGGCGCTCG CCATGCACAA GGAACGTGCC
AAAACGGTCA TGCGCGCGGC CGGAGTCAGC GTTCCGGAGG GCCGGGTCGT TAACCGTCAT
GATGCGGCGA AGTCACACCC GTTAACCCCT CCCTATGTCG TGAAGCCGAT CGCCGAGGGC
TCCTCCATGG GGGTCATCAT CGTGCGTGAC GAGCGCTCGC ATCCGCCCCA GATTCTCGCC
TCCGACGAGT GGGTCTACGG TGAGGAAGTC CTTGCAGAGA CTTACGTTGC GGGCCGCGAG
CTGACCTGCG CGGTGCTGGG CGACCGGGCC CTCGGAGTGA CCGAGATCAA GCCCGTCTCG
GGGGAGTGGT ACGACTTCGA TGCGAAGTAC GCCGGAGGGG GGTCGATCCA CGTCCTCCCC
GCGGATCTTA AACTAAATAT TTACCAGCGT GTCCAAGAGT TGGCGTTAAC GGCGCATCAA
GCACTGGGAT GTCGTGGCGT CAGCCGTGCC GACCTTCGTT ACGACGACAC GCCGGGTGGA
ACCGGCGCTC TCGTCGTCCT CGAGGTCAAC ACGCAGCCAG GGATGACCCA GACGAGCCTT
GTGCCGGAGA TCGCGGCCCA CGCAGGCCAG AGTTTCGGTG AACTCGTCCG ATGGATGGTG
GAGGACGCTT CTCTCAACCG CTGA
|
|---|
| Protein sequence | MSKHVAVLMG GWSSEREISL RSGNACAEAL EGEGYRVTRV NVGPDIATVL TELRPDAALN
ALHGPAGEDG TIQGLLEILK IPYTHSGVLA SALAMHKERA KTVMRAAGVS VPEGRVVNRH
DAAKSHPLTP PYVVKPIAEG SSMGVIIVRD ERSHPPQILA SDEWVYGEEV LAETYVAGRE
LTCAVLGDRA LGVTEIKPVS GEWYDFDAKY AGGGSIHVLP ADLKLNIYQR VQELALTAHQ
ALGCRGVSRA DLRYDDTPGG TGALVVLEVN TQPGMTQTSL VPEIAAHAGQ SFGELVRWMV
EDASLNR
|
|---|
| |