| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2466 |
|---|
| Symbol | |
|---|
| ID | 5835625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 2764976 |
|---|
| End bp | 2767042 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641368267 |
|---|
| Product | OPT family oligopeptide transporter |
|---|
| Protein accession | YP_001639932 |
|---|
| Protein GI | 163851889 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1297] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR00728] oligopeptide transporters, OPT superfamily
[TIGR00733] putative oligopeptide transporter, OPT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.945797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACGT CCCGAGCCGC GGGGCGGCAC CGGAGACGCC TGCCCGTGGA CGCACGATCC
GACGAACGCT CAACCCCGCA CGGCGAGGCC GGCGGGACTC ACCCTCGCCA TGCCGCTGAA
CTCACCCTGC GCGGGCTTCT GCTCGGGGCG GTGATCACCG TCGTGTTCAT GACCGCCAAC
CTCTATATGG GGCTGAAGAC GGGCGTGACC TTCTCGACCT CGATCCCCGC GGCGATGCTG
TCGATGGGGT TGCTGCGCCT GTTCGGTGGC TCCGGCATCC TCGAGAACAA CATCGTCCAG
ACCCAGGGGT CGGCGGCCGG GACGCTGTGC AACGTCATCC TCGTCCTGCC GGGCCTCGTT
CTGATCGGCC ATTGGCACGG TTTCCCGTTC TGGCAGACGA CGGCCGTCTG CCTGATCGGC
GGTCTGATCG GACTCGTCTA CTCGATCCCC CTCCGCCGCG CCCTGGTGAT GGGCGCCGGG
CTTCCGTATC CCGAGGGCAC TGCCGCGGCC GAAGTGCTGC ATGCGGGTGA GGCCGGCGAC
CGGGGTGGTC TGCGCATCCT GCTGGGCGCG GCGGGAGCGG GCGGGCTGAT CGGGTTCGCC
ACCACCGGCT TGCGCCTCCT CACTGAGGGC CTCCACACCA CCCTTGCCGT GGGGTCGGCC
CTGTTCCGGC TCGCCACGGG CTTTTCCCCC GCCCTGGTCG GGGTGGGCTA TCTCGTCGGG
CTCGGCGCCT GTCTCGCCCT TCTGGCGGGC GTCGCCCTGG CCTGGGGCGC CGCGGTGCCG
CTGCTCACGG CCTTCGGTGA CGGGGCTGGC GCCGGCTCGG CGGAGGCGAC GGCGAGGGCG
GTCTGGTCGG AGAAGGTCCG GCTCATCGGC GCCGGTATCA TCGCCGTCGG CGCGATCTGG
ACGGTCGCTT CACTCGGCCG CTCGATCCTG GGAAGCATCC GTTCCGCCTT CGGTGCGGCG
CAGGGCGGCG GGAAGGCTTT GCGCCAGTTG CCGCGCCAGG AACGCGACCT GCCGATCACC
TGGGTTGCAG GCAGCTCGCT TCTGCTCGCG CTGCCCCTGG CTTGGCTGTT CTTCCATTTC
AGCGCGGAGG CCGAACTGGG TGGTCTGCGT TTCGCGCTGG TCGCAGTCGC CACCGTCTTC
ACGGTCGGCT TCGGCTTCCT GATGGCGGCC GCCTGCGGCT ATCTCGCGGG CCTTCTCGGC
TCGTCCTCCA GCCCGATTTC CGGCATCGGA ATCCTGACCA CGCTCCTCGC CGCCCTACTG
ATCCCGCTCC TGCTCGGCCG CTCCGCCGGG CCGGAGGGCG AGCGCTTCGT CGTCGCGGCC
GTGCTGCTCC TGTCGGCCAT CGTCGTCACC ACCGCTTCGA TCGCCAACGA CAACCTTCAG
GATCTCAAGA CCGGCCAACT CGTCGATGCC ACGCCGTGGC GCCAACAGGT GGCGCTGGCG
GCGGGCGTCG CGGTCGGCGC CCTGGTGATC GCCCCACTGC TCGACCTGCT CTACAACGCC
TACGGTTTCG TCGGTGCCCT GCCGCGGGAG GGGATGGACG AGGCGGCCGC CCTTCCGGCG
CCCCAGGCCG CGCTGATGAC GCAGATCGCC GGCGGCATCG TGCGCAACGA GTTGCCCTGG
TCGATGGTGG CGACGGGGGC CGGACTCGGG GCGATCCTCG TTGCGGTGGA GGCGCGTCTG
CGCCGCAGCG GCCGTTCGTT TCCGGCGCTC ACCGTCGGCA TCGGCATGTA CCTGCCGCTG
GAGGTGGTGG TGACGATCGC CTGCGGCGGC CTCGTCGGAC GCCTCGCCGA GCGCCGGCTG
CGCGGGGCGG GCGAGGCGGC GCGCGCCGGC GGACGCCGCC GCGGCGTGCT GCTGGCCTCA
GGCTTCCTCG TGGGCGAGAG TGTCGTCGGC GTCCTGCTCG CCGCCGCCGA CACGCTGAGC
GGACGCGGCG GTTCCCTCGC CTTCGCGGCC GATGCGCTGG GCGGGGCAGG GCCGTGGCTC
GGCCCCATCG TCTTCCTGCT GGTGCTGGCG GCCTTCTACC GCATCGCTTC GCGCACGGAC
GAGGCGGGCC GCTGCGGCGA CACCTGA
|
|---|
| Protein sequence | MSTSRAAGRH RRRLPVDARS DERSTPHGEA GGTHPRHAAE LTLRGLLLGA VITVVFMTAN
LYMGLKTGVT FSTSIPAAML SMGLLRLFGG SGILENNIVQ TQGSAAGTLC NVILVLPGLV
LIGHWHGFPF WQTTAVCLIG GLIGLVYSIP LRRALVMGAG LPYPEGTAAA EVLHAGEAGD
RGGLRILLGA AGAGGLIGFA TTGLRLLTEG LHTTLAVGSA LFRLATGFSP ALVGVGYLVG
LGACLALLAG VALAWGAAVP LLTAFGDGAG AGSAEATARA VWSEKVRLIG AGIIAVGAIW
TVASLGRSIL GSIRSAFGAA QGGGKALRQL PRQERDLPIT WVAGSSLLLA LPLAWLFFHF
SAEAELGGLR FALVAVATVF TVGFGFLMAA ACGYLAGLLG SSSSPISGIG ILTTLLAALL
IPLLLGRSAG PEGERFVVAA VLLLSAIVVT TASIANDNLQ DLKTGQLVDA TPWRQQVALA
AGVAVGALVI APLLDLLYNA YGFVGALPRE GMDEAAALPA PQAALMTQIA GGIVRNELPW
SMVATGAGLG AILVAVEARL RRSGRSFPAL TVGIGMYLPL EVVVTIACGG LVGRLAERRL
RGAGEAARAG GRRRGVLLAS GFLVGESVVG VLLAAADTLS GRGGSLAFAA DALGGAGPWL
GPIVFLLVLA AFYRIASRTD EAGRCGDT
|
|---|
| |