| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2348 |
|---|
| Symbol | |
|---|
| ID | 5831906 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 2599593 |
|---|
| End bp | 2601032 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641368147 |
|---|
| Product | short chain fatty acid transporter |
|---|
| Protein accession | YP_001639814 |
|---|
| Protein GI | 163851771 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2031] Short chain fatty acids transporter |
|---|
| TIGRFAM ID | [TIGR00366] conserved hypothetical integral membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.294076 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCGC CCCCAGAGCC CCGCACGCGG ACCGAGGAGC GGGCCATGGC CCGTCTCGCA
CTCCGCTTCA CCGATTGGGC GGAGAAGTGG TTTCCCGACG CCTTCGTGTT CGTGGCCATC
GCCGTTGTCA TCGTGGCATC CGCCGCGCTC ATCAACGGCG CGCCGGTCCA GGCGGTGTCG
AAGAGCTTCG GCGACGGGTT CTGGAGCCTG ATCCCCTTCA CCATGCAGAT GGTCTTCGTC
ACCATCGGCG GCTACGTGGT GGCGACCTCC GCCCCGGTGC AGGCCCTGAT CGACCGGATG
GCGCTGGTGC CGAAGACGGG CCGCGGCGCC ATCGGATACG TGGCGCTCGC CACCATGCTC
TCCTCGCTCC TGAGCTGGGG CCTGAGCTTG ATCTTCGGCG GCTTGCTCGC CCGCGCGCTC
GCCCGGCGCA CCGAGTTGCG GATGGATTAC CGCGCCGCCG GTGCCGCCGC CTATCTCGGC
CTCGGCGCGA CCTGGGCGAT GGGCCTGTCT TCCTCAGCGG CGCAGCTTCA GGCCAACCCG
AAAAGCCTGC CGCCGGGCCT TCTGCCGATC ACCGGCGTGA TCCCGTTCAG CGAGACGATC
TTCCTGTGGC AGTCGATCCT GATTGCCGCG ATCCTCGTGG TGATGTCGGC GCTGATCGCG
CTCGCCTCCG CGCCGGGCCG CGAGACCGCG GTGACGGCGC AGGATCTCGG CGTCGATGTC
TCCAAGCAGG AGGATAGCGT CGCCCCGCCC AAGCAGCCCG GCGAATGGCT GGAGCACGCG
CCCGTCCTGA CGATCCTCAT CGGCCTGCTG GCGGCGGGTT GGCTGATCCA GGAATTCGCG
CGCCAGGATT GGATGGTCGC GATCTCCAAC CTCAACACCT ACAACTTCCT GTTCCTGATG
GCCGGCTTCC TGCTGCACTG GCGGCCCAAG CGCTTCCTGG CAGCGCTCTC CAAGGCGGTC
CCGGCCACCG CCGGCATCCT GATCCAGTTC CCGTTCTACG CCGCCATCGC CGCGATCCTG
ACGGGCGCCA AGAACGCCGC CGGCCACAGC CTTTCGGACG TCATCGCCTA CGCTTTCGTG
GCGATGAACA CGCAAGGCTC ATTCCCGCTC GCCATGGGCG TCTACTCGGC CCTGCTCGGC
TTCTTCATCC CCTCGGGCGG CGGCAAGTGG CTGTTGGAGG CGCCCTACGT GATGCAGGCG
GCCAACGAGT TGAAGGTGCA TCTCGGCTGG GCGGTGCAGG TCTACAATGC GGCCGAGGCG
CTGCCGAACC TCATCAACCC GTTCTTCATG CTGCCGCTGC TCGGCATCCT CGGTCTGAAG
GCCCGCGATA TCGTCGGCTT CAGCTTCCTG CAGCTCATCG TCCACCTGCC GGTGGTGCTG
TTCCTGCTCT GGGCACTCGC CTTCACGCTG GAATATCACC CGCCGGTCCT GCCGGGATGA
|
|---|
| Protein sequence | MDAPPEPRTR TEERAMARLA LRFTDWAEKW FPDAFVFVAI AVVIVASAAL INGAPVQAVS
KSFGDGFWSL IPFTMQMVFV TIGGYVVATS APVQALIDRM ALVPKTGRGA IGYVALATML
SSLLSWGLSL IFGGLLARAL ARRTELRMDY RAAGAAAYLG LGATWAMGLS SSAAQLQANP
KSLPPGLLPI TGVIPFSETI FLWQSILIAA ILVVMSALIA LASAPGRETA VTAQDLGVDV
SKQEDSVAPP KQPGEWLEHA PVLTILIGLL AAGWLIQEFA RQDWMVAISN LNTYNFLFLM
AGFLLHWRPK RFLAALSKAV PATAGILIQF PFYAAIAAIL TGAKNAAGHS LSDVIAYAFV
AMNTQGSFPL AMGVYSALLG FFIPSGGGKW LLEAPYVMQA ANELKVHLGW AVQVYNAAEA
LPNLINPFFM LPLLGILGLK ARDIVGFSFL QLIVHLPVVL FLLWALAFTL EYHPPVLPG
|
|---|
| |