| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2290 |
|---|
| Symbol | |
|---|
| ID | 5830927 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 2538983 |
|---|
| End bp | 2540293 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641368089 |
|---|
| Product | general substrate transporter |
|---|
| Protein accession | YP_001639756 |
|---|
| Protein GI | 163851713 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.931887 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.162976 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACTCGC CCGCAAGCGC CGCGCCCCCG CGCCTCGACC GCAAGGCCGT GGGAGCGGTC
GTGCTCGGCA ACGCCCTCGA ATTCTACGAT TTCACGATCT ACGCCTTCTT CGCCAAGTCG
ATCGGCGCGA CCTTCTTCCC TTCGGACAGT CCGACCGACA GCCTGCTCGC CTCGCTCGCC
CTGTTCGGGA TCGGCTACGT CATGCGCCCG GTGGGCGGCG TGCTGATCGG CGCCTTCGCC
GACCGGGCCG GGCGCAAGCC CGCGATGCTC ATCACCATCG CGCTGATGGC GGTGGGCATG
CTGATGCTGG CGGCCTGCCC CGGCACGGCG GTCCTCGGCG TCTGGGCACA GGTGATCGTG
ATCGCCGGGC GGCTGATCCA GGGGCTGGCG CTCGGCGGCG AGGTCGGACC CTCCACCGCC
TTCCTGATCG AGGCGGCCCC GGCGCGGCAC CGCGGCTTCG TCGCGAGTTG GCAGATCGCG
AGCCAGGGCT GCGCCGCCCT GTTCGCCGGC CTGTTCGCCA CCGTGCTGAC CCTCGTGCTC
GGCGATGCGG CCATGGCCGA TTGGGGTTGG CGGCTGATGT TCGGTCTCGG CCTTCTCGTC
GTGCCGGTCG GCCTCGTGAT CCGCAGTCAC CTGCCGGAGA CGGCAGGCGA GGGGCACGAC
CCCGCCGCTG CTGATTCGAC GGGGGCGGTG CTCGGTCGGC TGCTGCGCCA GCACGGGCGG
ATGCTCGGGC TGACCTTCCT CGTCATCGCC GCCTCGACCG TCTCGAACGC GGTGGGCACC
AACATGCCGG TCTATGCCGG GGCGACGCTC GGGCTCTCGG AGATGGCGGC CAACGCCGTG
CCGATCGCCC TGGGGCTGGC CTCCGTGATC TTTCCGCTTC TCGGCGGCTG GCTCGCCGAC
CGGTTCGGGC GCAAGCCGGT GATGATCTGG CCGCGCGCGC TGATCCTGTT GCTCGCCGTG
CCAACCTTCC TATGGATGCT GGGCAGCCCA AGCGCGCTCA GCGTCTACGC CGTGACCTTC
CTGCTCTCGG CCCTGTCCTC GATCAACGCG GCGGCGATCA TCGTCGCCAT TCCCGAAGCC
CTGCCGCGGG CGGTGCGCAG CGCCGGGTTG TCGATCGTCT ACGCGCTCTC GGTCTCGATC
TTCGGCGGCA GCACGAACTA CGTCGTGAAC TGGCTGATCG CCGCCACCGG CGATCGGATG
GCGCCAGCCT ACTACCTCGC CGCCTTCAGC CTCGTCGGCA CGGTCGCCGC CCTGCTGCTG
CCGGAGACGC GGGGGCGGGA TATCCATGTC GATACCGCGA CGCGGAGGTG A
|
|---|
| Protein sequence | MHSPASAAPP RLDRKAVGAV VLGNALEFYD FTIYAFFAKS IGATFFPSDS PTDSLLASLA
LFGIGYVMRP VGGVLIGAFA DRAGRKPAML ITIALMAVGM LMLAACPGTA VLGVWAQVIV
IAGRLIQGLA LGGEVGPSTA FLIEAAPARH RGFVASWQIA SQGCAALFAG LFATVLTLVL
GDAAMADWGW RLMFGLGLLV VPVGLVIRSH LPETAGEGHD PAAADSTGAV LGRLLRQHGR
MLGLTFLVIA ASTVSNAVGT NMPVYAGATL GLSEMAANAV PIALGLASVI FPLLGGWLAD
RFGRKPVMIW PRALILLLAV PTFLWMLGSP SALSVYAVTF LLSALSSINA AAIIVAIPEA
LPRAVRSAGL SIVYALSVSI FGGSTNYVVN WLIAATGDRM APAYYLAAFS LVGTVAALLL
PETRGRDIHV DTATRR
|
|---|
| |