| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2082 |
|---|
| Symbol | |
|---|
| ID | 5832792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 2323835 |
|---|
| End bp | 2324995 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641367880 |
|---|
| Product | membrane-associated zinc metalloprotease |
|---|
| Protein accession | YP_001639549 |
|---|
| Protein GI | 163851506 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.366496 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.128586 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTCT TGAGCGGCAT GGGCGGCAAC GCCGCCGGCT TCTTCGGCGC GGTGATCCCG
TTCCTGATCG TGCTGACGAT CGTCGTGTTC GTGCACGAAA TGGGCCATTT CCTGGTCGGG
CGCTGGTGCG GCGTCGGCGT CACCGCCTTC TCCATCGGCT TCGGCCCGGA GATCATCGGC
TTCAACGACC GGCGGGGCAC CCGCTGGAAG CTCTCGGCGA TCCCGCTCGG CGGCTACGTG
AAATTTGTGG GCGATGCCAA CGGCGCCAGC GTGCCCGACC CGGAGGCGGT CGCCCGCATG
AGCCCGCACG AGCGGGCGGT GAGCTTCCCG ACCCAACCCG TGGCCAAGCG CGCAGCCATC
GTCGCCGCCG GCCCCATCGC CAACTTCATC CTGGCCATCG CCGTCTTCGC GGGCGCGATC
TATGTCAGCG GCCGCTATGA GACGCCGGCG CGCGTCGAGG CGGTGCAGCC GAACAGCGCC
GCCGCGCGGG CGGGCTTCCA GCCCGGCGAC GTGATCCGCA CGATCGACGG CCAGACGGTC
AACACCTTCA ACGATATGCA GCGCGTCGTC TCGGCCGCCG CCGGCTCCTC GCTGGCGGTG
ACGGTCGATC GCGGCGGGCA GGTCCAGACC CTGACCGCCG TGCCAGACAT GATCGAGGAG
CGCACGCCCT TCGGTCGCCA CCGCTTCGGC CGGCTCGGCA TCAACGGGCC GAACGCCGGC
GCGGCCAAGC TGGTGCATTA CGGCCCGTTC GAGTCGCTGA AGCTCGGCGT CCGCGAGACC
GCCTTCGTGG TGGAGCGGAC CTTCGACTAC ATCGGCAAGC TCGTGACCGG GCGCGAATCC
GCCGACCAGC TCTCCGGCCC GATCGGCATC GCCCGGGTCT CGGGCGAGGT GGCGCGCGTC
GGCGGCGTCG GCGGACTGAT CGGGCTGGTG GCGCTCCTGT CGGTCTCGAT CGGGCTGCTC
AACCTGTTCC CGATCCCGCT CCTCGATGGG GGGCACCTGA TGTTCTACGC CTTCGAGGCG
GTGCGCGGCC GCCCCTTGAG CGAGCGGGCG CAGGAGATCG GCTTCCGCAT CGGGCTGGCC
TTCGTGCTGA TGCTGATGCT GTTCGCAGCC TGGAACGACA TCCTCAATCT CGGCGCCTCG
CTGAGCCAGC GCGGCACCTG A
|
|---|
| Protein sequence | MEFLSGMGGN AAGFFGAVIP FLIVLTIVVF VHEMGHFLVG RWCGVGVTAF SIGFGPEIIG
FNDRRGTRWK LSAIPLGGYV KFVGDANGAS VPDPEAVARM SPHERAVSFP TQPVAKRAAI
VAAGPIANFI LAIAVFAGAI YVSGRYETPA RVEAVQPNSA AARAGFQPGD VIRTIDGQTV
NTFNDMQRVV SAAAGSSLAV TVDRGGQVQT LTAVPDMIEE RTPFGRHRFG RLGINGPNAG
AAKLVHYGPF ESLKLGVRET AFVVERTFDY IGKLVTGRES ADQLSGPIGI ARVSGEVARV
GGVGGLIGLV ALLSVSIGLL NLFPIPLLDG GHLMFYAFEA VRGRPLSERA QEIGFRIGLA
FVLMLMLFAA WNDILNLGAS LSQRGT
|
|---|
| |