Gene Mext_1945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMext_1945 
Symbol 
ID5831381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium extorquens PA1 
KingdomBacteria 
Replicon accessionNC_010172 
Strand
Start bp2166543 
End bp2167211 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content72% 
IMG OID641367745 
Producthypothetical protein 
Protein accessionYP_001639415 
Protein GI163851372 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0421] Spermidine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.677507 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATTCCCT GGGAGCACCT CGACACCGCC GCGATCCCCG GTGAGGCGGG CAGCTTGCGC 
CTGATGCGCC GCGGCAGCGA GTTCTCGATC CAGCTCGATC GCAACGAGCT CATGAACAGC
CGTCTCAGCG GCTCCGAGGA GGCGCTGGCG CGGCTCTCGG CCGAGCGGAT CGCGGGGGTG
AAGACGCCGC GCGTGCTGAT CGGCGGCTAC GGCATGGGCT TCACCCTGCG CGCCGCCCTG
AGCCTTCTGC CGGGCACGGC GCAGGTGAGC GTGGCCGAGA TCGTCCCGGC GGTGCTCGCC
TGGGCGCGTG GTCCGATGGC GGAGCTGACC GGCGGCAGCC TGGATGACCC GCGGGTCTCA
ATCCGTGAAG CCGACGTCGC CGCGGTGATC CGCGAGCGTC CGGGCGTCTG GGACGCGATC
CTGCTCGATG TGGATAACGG CCCCGATGGC CTCACCCGCA GCGCCAACGA CCGTCTCTAC
GACGCCGCCG GCCTCGGTGC CGCGCGCGCG GCTTTGCGCC CCCGCGGCGT GCTGGCGGTC
TGGTCAGCGC ATCCCGATGC CGCTTTCAGC CGGCGGCTCG CACAGGCGGG GTTTTCGGTC
GAGGAGGTCG GCACTCGGGC ACGCGGCAAG CGCGGGGCGC GGCATGTGAT CTGGCTGGCC
CGGCGCTGA
 
Protein sequence
MIPWEHLDTA AIPGEAGSLR LMRRGSEFSI QLDRNELMNS RLSGSEEALA RLSAERIAGV 
KTPRVLIGGY GMGFTLRAAL SLLPGTAQVS VAEIVPAVLA WARGPMAELT GGSLDDPRVS
IREADVAAVI RERPGVWDAI LLDVDNGPDG LTRSANDRLY DAAGLGAARA ALRPRGVLAV
WSAHPDAAFS RRLAQAGFSV EEVGTRARGK RGARHVIWLA RR