Gene Mext_1943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMext_1943 
Symbol 
ID5831827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium extorquens PA1 
KingdomBacteria 
Replicon accessionNC_010172 
Strand
Start bp2163060 
End bp2164361 
Gene Length1302 bp 
Protein Length433 aa 
Translation table11 
GC content72% 
IMG OID641367743 
Productsqualene-associated FAD-dependent desaturase 
Protein accessionYP_001639413 
Protein GI163851370 
COG category[S] Function unknown 
COG ID[COG3349] Uncharacterized conserved protein 
TIGRFAM ID[TIGR03467] squalene-associated FAD-dependent desaturase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.273475 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.570646 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGGTA CGGTTCACGT TGTCGGCGCC GGGCTCGCCG GCCTCTCGGC GGCGGCCTCG 
CTGGCGGAGG CCGGCAGCCG CGTGGTGCTG CACGAAGCCG CCAAGCAGGC GGGTGGGCGC
TGCCGCTCCT ACTACGACCC CTCGCTCGGG CTGACCATCG ATAACGGCAA CCACCTGCTC
CTGTCGGGCA ACCGCTCGTC CCTCGACTTC ATGCGCCTCA TCGGTGCGCC GGCCAACGCC
CTGACCGGGC CGGACGAGGC GGTCTATGAC TTCGCCGACA TTCGTACCGG CGAGCGCTGG
ACCCTGCGCC CGAACGAGGG CCGTTTGCCG TGGTGGGTGC TGCGGGCCGG CCGGCGCGTG
CCAGGCACCC GCGCGCGCGA CTACCTCGCG CCGGTCTCCC TGCTGATGGC CGCCTCCGGC
AACAAGCCGG GCCAGAGCGG CACGATCGGC GAGAAGATGT CCTGCGAGGG GCCGCTCTAC
GAGCGGCTCT GGCACCCGGT CCTGCTCGCT GCGCTCAACA CCGAGCCGCG CGAGAGCGAT
GTCGGGCTCG CTGCCACCAT CCTGCGCGAG ACCTTCGGGG GGGGCGGGCG TGCCTGTCGG
CCGCTCATCG CCGTCGAGGG CCTGTCCACC GCCTTCGTCG ATCCGGCCCT GCGCTACCTC
CAGAGCCGCG GCGCCGAGAT CCGCTACGGC CGGCGGCTGC GAGCGCTGAC GCTCGGCCAG
GGCCGCATCG AGCGCCTGGA CTTCACCGAC GAGCCGACGG TGATCGGTCC CGACGACGCG
GTGGTCATGG CTCTGCCGCC TTGGGTGGCG AGTGAACTCC TGCCCGGCAC GCCCGCGCCG
CAGGAATTCC GCTCGATCGT CAACGCGCAT TTCGCCGTGC GCCCGCCCGA GGGCGCTCCG
CTGATGCTCG GCGTCGTCGG CGGCCTGACC GAGTGGCTGT TCGCCTACCC GGACCGCTTC
TCCGTCACCA TCAGCGGCGC CGACCGGCTG CTGGAGGAGG GCCGCGAGGA TCTCGCGCGC
CGCATCTGGA CCGAGATCGC AGATCTCAAC GGTCTTGCAC GGGATTTGCC CAACTGGCAG
ATCGTCAAGG AAAAGCGTGC GACGTTCGCG GCCACGCCCG CGGAAGCTGC GCGCCGCCCC
GGCGCGGCGA CGCGCTACCG GAATCTGGTT CTCGCCGGTG ATTGGACGGA GACGGGGCTG
CCCTCGACCA TCGAGGGCGC GATCCGATCC GGCGCAAACG CCGCGCAAGC CCTGTTCCGC
ACCGGGATGT GCGGACGGGC ACAGGCACAG GGAGTCGCTT GA
 
Protein sequence
MTGTVHVVGA GLAGLSAAAS LAEAGSRVVL HEAAKQAGGR CRSYYDPSLG LTIDNGNHLL 
LSGNRSSLDF MRLIGAPANA LTGPDEAVYD FADIRTGERW TLRPNEGRLP WWVLRAGRRV
PGTRARDYLA PVSLLMAASG NKPGQSGTIG EKMSCEGPLY ERLWHPVLLA ALNTEPRESD
VGLAATILRE TFGGGGRACR PLIAVEGLST AFVDPALRYL QSRGAEIRYG RRLRALTLGQ
GRIERLDFTD EPTVIGPDDA VVMALPPWVA SELLPGTPAP QEFRSIVNAH FAVRPPEGAP
LMLGVVGGLT EWLFAYPDRF SVTISGADRL LEEGREDLAR RIWTEIADLN GLARDLPNWQ
IVKEKRATFA ATPAEAARRP GAATRYRNLV LAGDWTETGL PSTIEGAIRS GANAAQALFR
TGMCGRAQAQ GVA