| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1787 |
|---|
| Symbol | |
|---|
| ID | 5833555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 2006941 |
|---|
| End bp | 2008209 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641367586 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_001639257 |
|---|
| Protein GI | 163851214 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.16455 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCATT TCCACTACCG GGACGGGCGC CTCCACGCCG AGGACGTCGA TCTGACCGCG
CTGGCCGAGG AGGTCGGCAC GCCGTTCTAC TGCTACAGCA CCGCCACCTT GGAGCGGCAC
TACCGCGTCT TCGCCGAGGC CTTCGCGGGC GATGATGCGC TGGTGTGCTT TGCCATGAAG
GCGAACTCGA ACCAGGCGGT GCTCGCCACC CTCGCGCACC AAGGCGCGGG CATGGACATC
GTCTCCGAGG GAGAATTGCG CCGGGCGCTG GCCGCGGGCG TGCCGGGCGA GCGCATCGTG
TTCTCCGGCG TCGGCAAGAC CCGCGAGGAG ATGGCTGCGG CGCTCGACGC GAACATCCTC
TGCTTCAACG TCGAGAGCGA GCCGGAACTC GCCGCCCTGT CCGAGGTGGC CGTCGCGCGC
GGGCGCAAGG CGCCGGTCTC GATCCGCGTG AACCCGGATG TCGATGCGCT GACGCATGCC
AAGATCTCGA CCGGCAAGTC CGACAACAAA TTCGGCATCC CGATCTCCCG CGCCCGCGCG
GTCTATGCCG GGGCCGCCCG GCTACCGGGC CTGGAGATCG TCGGCGTCGA TGCGCATATC
GGCAGCCAGA TCACCGACCT GACCCCGTTC GACAACGCCG CGCGCCTGCT CTGCGAGCTG
GCCCGCGATC TGCTCGCCGA CGGGCACCGG CTGCACCACG TCGATTTCGG CGGCGGCCTC
GGCATTCCCT ATCGCGACGA CAACGCGCCC CCGCCCGATC CGACGGCTCT GGCCGCGATC
CTGCGCCCGC ATTTCAAGCC GCTCGGCCTG CGCCCCGTCT TCGAGATCGG GCGGATGATC
GCCGGCAATG CCGGCATCCT CGTCACCCGC GTGATCTACG TGAAGCCGAC GGACGAGAAG
ACCTTCGTCA TCGTCGACGG AGCGATGAAC GATCTGATCC GCCCGACGCT CTACGAGGCC
TTCCACGCCC TGCGCCCGGT GCGCGAGCCC GCGCCCGACA CGCCCCGGCT GACGGCGGAC
GTGGTCGGCC CGGTCTGCGA GAGCGGCGAC TATCTCGCCC TCGGGCGCGA GATGCCGATG
GTGGCGCCGG GCGACCTCAT CGCGGTGATG AGCGCGGGCG CCTACGGTGC GGTCCAGGCC
TGCACCTACA ACAGCCGCCG CCTCGTGCCC GAGGTGCTCG TGACCGGCGA CCGCTCGGCC
GTGGTGCGCC CGCGCCCGAG CTACGACGAC CTGATCCGCC TCGACCGCCT GCCCGACTGG
CTCGCGTGA
|
|---|
| Protein sequence | MHHFHYRDGR LHAEDVDLTA LAEEVGTPFY CYSTATLERH YRVFAEAFAG DDALVCFAMK
ANSNQAVLAT LAHQGAGMDI VSEGELRRAL AAGVPGERIV FSGVGKTREE MAAALDANIL
CFNVESEPEL AALSEVAVAR GRKAPVSIRV NPDVDALTHA KISTGKSDNK FGIPISRARA
VYAGAARLPG LEIVGVDAHI GSQITDLTPF DNAARLLCEL ARDLLADGHR LHHVDFGGGL
GIPYRDDNAP PPDPTALAAI LRPHFKPLGL RPVFEIGRMI AGNAGILVTR VIYVKPTDEK
TFVIVDGAMN DLIRPTLYEA FHALRPVREP APDTPRLTAD VVGPVCESGD YLALGREMPM
VAPGDLIAVM SAGAYGAVQA CTYNSRRLVP EVLVTGDRSA VVRPRPSYDD LIRLDRLPDW
LA
|
|---|
| |