| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1641 |
|---|
| Symbol | |
|---|
| ID | 5832582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 1830117 |
|---|
| End bp | 1831931 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641367439 |
|---|
| Product | shikimate kinase., 3-dehydroquinate synthase |
|---|
| Protein accession | YP_001639111 |
|---|
| Protein GI | 163851068 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0337] 3-dehydroquinate synthetase
[COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.124892 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGGCTTT CGACTCGGCG CCGACGGGGG TACCGGACGC TTCGCCGCTT CCGCAAAACC
GTCTATGACC GCCCGATGAC CGTCCCCCTG CCGCCGGCGC CGCCGCCCGG CGAACCGATC
GAAGCACGAC TGCGCCGCGG CCTCGGAGCC CGGTCGATCG TGCTCGTCGG CCTGATGGGG
GCGGGCAAGA GCACCGTCGG GCGCCGCCTG GCGGGGCGTC TCGGGCTGAT GTTCAAGGAT
GCCGACCACG AGATCGAGGC GGCGGCCAAG CTCACCATCG CCGACATTTT CTCGATCTAC
GGCGAGGCGA GCTTCCGCGA GGGCGAGGAA CGGGTGATCG CGCGTCTGCT GCGCGAGGGG
CCGATGGTGC TGGCCACCGG AGGCGGCGCC TTCATGCGCG AGGCGACGCG GGCGCGGATC
GCCGAGGGGG CCATCTCGGT CTGGCTCAAG GCCGACCTCG ACGTGCTGAT GCGACGCGTG
CGCAAACGCA ACACGCGCCC TCTGCTCCAG ACCGAGGATC CGGAGGCGAC CATGCGCACA
CTGATGGAGG TGCGCCATCC GGTCTATGCC CAAGCCGATG TCACGGTGCT GTCCCGCGAA
GTGTCCCACG ACCGCGTGGT GGAGGACGTG ATGGAAGCTC TCGATATCCA CATCAACCCG
TCTCATACGA CACAATCACA ACATTTGACA TTCAGTATGA CGCAGCAACC CTCGCGTGTG
AACGTTCCCC TGTCGGGCGG ACGCGAATAC GATATTCGGA TCGGTCGGGG TCTTATCGAC
GCGGTGGGTG CGGAGGCGCG GGATCTCGGC GCCCGGGCCG CCGGCATCGT CACCGACGAG
ACGGTCGCCG GCCTCTACGG CGAGCGTGTG CGGGCCAGCC TCGAGGCCGC CGGGTTGCGC
TGCGGCATCA TCGCCGTGCC GCCGGGTGAG GCCTCGAAGA GCTACGCGGA ATTCGCCCGC
GTCTGCGACG GCCTGCTCGC CCAGAAGATC GAGCGCGGCG ACCTCGTCGT GGCGCTCGGC
GGCGGCGTGG TCGGCGATCT CGCGGGCTTC GCGGCGGCCT CCCTGCGGCG CGGTGTCCGC
TTTCTCCAGG TTCCGACCAC CCTGCTCGCG CAGGTTGATT CCTCGGTGGG GGGAAAGACC
GGGATCAATT CGCCGCTCGG CAAGAATCTG ATCGGCGCCT TCCACCAGCC CCGCCTCGTA
CTGGCCGACA CCGCCACCCT CGACACGCTC TCGGAGCGCG AGATGCGGGC GGGTTACGCC
GAGGTCGCCA AGTATGGCTT GATCGGGGAT GCCGGCTTCT TCGAGTGGTG CGAGGCGAAC
TGGGCCGGCA TCTTCTCCGG TGGGCCGGAG CGCGACGAGG CCGTGGCCGC CTGCTGCCGC
GCCAAGGCCG GCGTCGTGAC CCGCGACGAG CGGGAGGACG GCGAGCGCGC CCTGCTCAAT
CTCGGCCATA CCTTCGGCCA CGCCCTGGAG CGGCTGACCG GCTACGACGC GGCCCGCCTC
GTCCACGGCG AGGGCGTCGC GATCGGTCTG GCGCTGGCCT TCCGCTTCTC GGCCCGGCTC
GGCCTCTGCC CCGGCCAGGA TGCGGGACGC GTGGCCAACC ACCTCGCGCT CGCCGGCCTG
CCGACCCGCC TGCAACAGGT GCCCGGCGGG GCGGGTGACC CGGACGCCCT CCTCGACGCC
ATGGCCCAGG ACAAGAAGGT CCGCGACGGG CAGCTCACCT TCATCCTCGC CCACGGCATC
GGCCAGAGCT TCATCGCGCC GGGCATCGAT GCGGCGGAGG TGCGGGCCTT CCTGGAGGCG
GAACTGCGGG GCTGA
|
|---|
| Protein sequence | MGLSTRRRRG YRTLRRFRKT VYDRPMTVPL PPAPPPGEPI EARLRRGLGA RSIVLVGLMG
AGKSTVGRRL AGRLGLMFKD ADHEIEAAAK LTIADIFSIY GEASFREGEE RVIARLLREG
PMVLATGGGA FMREATRARI AEGAISVWLK ADLDVLMRRV RKRNTRPLLQ TEDPEATMRT
LMEVRHPVYA QADVTVLSRE VSHDRVVEDV MEALDIHINP SHTTQSQHLT FSMTQQPSRV
NVPLSGGREY DIRIGRGLID AVGAEARDLG ARAAGIVTDE TVAGLYGERV RASLEAAGLR
CGIIAVPPGE ASKSYAEFAR VCDGLLAQKI ERGDLVVALG GGVVGDLAGF AAASLRRGVR
FLQVPTTLLA QVDSSVGGKT GINSPLGKNL IGAFHQPRLV LADTATLDTL SEREMRAGYA
EVAKYGLIGD AGFFEWCEAN WAGIFSGGPE RDEAVAACCR AKAGVVTRDE REDGERALLN
LGHTFGHALE RLTGYDAARL VHGEGVAIGL ALAFRFSARL GLCPGQDAGR VANHLALAGL
PTRLQQVPGG AGDPDALLDA MAQDKKVRDG QLTFILAHGI GQSFIAPGID AAEVRAFLEA
ELRG
|
|---|
| |