Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mext_1633 |
Symbol | |
ID | 5835115 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium extorquens PA1 |
Kingdom | Bacteria |
Replicon accession | NC_010172 |
Strand | + |
Start bp | 1820957 |
End bp | 1822168 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641367431 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_001639103 |
Protein GI | 163851060 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.73321 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.191724 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGGAGGAG CCGTCCTTCC CCGAGCCATC TTTCCCGAGC CACCGGTGCC GCCCTTGTCC GACCATTCCC CCCTCGCCCT CGCCCAGGCG CTGATCCGCT GCCCCTCCGT GACTCCGGAG GAGGGAGGGG CTCTGTCGTT CCTGGCGGAT CGTCTTTCGC GGGCGGGCTT CTCGGTCGAG CGTCCGGTCT TCTCCGAGCC CGGCACGCCG GACATCCAGA ACCTCTACGC CCGGATCGGC ACCGCAGGGC CGGTCCTTGT CTTTGCCGGC CATACCGACG TGGTGCCGCC GGGCGAAGTC GGCTCCTGGA CCCACGGGCC GTTCTCGGGC GAAGTCGCCG AGGGCTTCCT CTACGGGCGC GGCGCGGTGG ACATGAAGGG CGGCATCGCC TGCATGCTCG CCGCGACGCT CGCCTTCCTC GATCGGCACG GGCCGGATTT CGGCGGCTCC ATCGCCTTCC TCGTCACCGG CGACGAGGAG GGGCCGGCGG TCAACGGCAC CGTGAAGCTG CTCGATTGGG CGAAGGCGAG GGGCGAGCGC TTCGACCATT GCCTGCTCGG CGAGCCGACC AACCCCGACA CCCTCGGCGA GATGATCAAG ATCGGCCGGC GCGGCTCGCT GACCGGGCGC ATCACCGTGC ACGGCCGCCA GGGCCACGTC GCCTATCCGC ACCGGGCCGA GAACCCGATT CCCGGCCTGC TTCGCCTCGC CTCGGCGCTG ACCGCCGACC CCCTCGACGG CGGCACCGCG CATTTCGACG CGTCGAACCT CGAATTCACG ACGATCGATG TCGGCAACCC GGCCACCAAC GTGATCCCGG CCTCGGCCAA GGCCGTGTTT AACGTGCGCT TCAACGATGA CTGGACGGCG GACACCCTCG GTGCCGAGAT CCGGCGGCGG CTGGAGGCGG CGGCCGGCAA CGCGGTGCGG TTCAGCCTCG ACCTTCAGCC CTCGAACTCG CCCGCCTTCC TGACGCAGCC CGACGCCTTC GTCGATCGGG TGGCCGATGC GATTGAGGCC GAGACCGGCC GGCGCCCGGC GCTCTCCACC ACGGGGGGCA CCTCGGACGC CCGCTTCATC AAGGATGCCT GCCCGGTGAT CGAGTTCGGC CTCGTCGGAC GGACCATGCA CGAGACCGAC GAGCGGGTGG CGGTAGCGGA TCTCGACCGG CTCACCGCGA TCTACGGGCG GGTGCTGGAC GCTTACTTCT GA
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Protein sequence | MGGAVLPRAI FPEPPVPPLS DHSPLALAQA LIRCPSVTPE EGGALSFLAD RLSRAGFSVE RPVFSEPGTP DIQNLYARIG TAGPVLVFAG HTDVVPPGEV GSWTHGPFSG EVAEGFLYGR GAVDMKGGIA CMLAATLAFL DRHGPDFGGS IAFLVTGDEE GPAVNGTVKL LDWAKARGER FDHCLLGEPT NPDTLGEMIK IGRRGSLTGR ITVHGRQGHV AYPHRAENPI PGLLRLASAL TADPLDGGTA HFDASNLEFT TIDVGNPATN VIPASAKAVF NVRFNDDWTA DTLGAEIRRR LEAAAGNAVR FSLDLQPSNS PAFLTQPDAF VDRVADAIEA ETGRRPALST TGGTSDARFI KDACPVIEFG LVGRTMHETD ERVAVADLDR LTAIYGRVLD AYF
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