| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1580 |
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| Symbol | trmE |
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| ID | 5833773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | + |
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| Start bp | 1762370 |
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| End bp | 1763704 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641367378 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001639050 |
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| Protein GI | 163851007 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.183316 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCCAC CCCTTCCCGA CCGCGACGAC ACGATCTTCG CTCCGGCGAG CGGCTTCGGC
CGTGCGGCGG TGACGGTGGT GCGCATCAGC GGGCCGGCGG CGGGGCTTAC GCTCGACCGG
CTGGCCGGCG GGCGCCCGGA GCCGCGCCGT CTCTCCCTGC GCTGCCTGCG CGACCCCGAA
TCCCGCGACA TCCTCGATCA GGCCCTGGTC GCATGGCTGC CGGGCCCTGC CACGGCCACC
GGCGAGGACA TGGCCGAGCT GCATCTGCAT GGGGGCCTCG CCGTGCGGTC CGCCGTGCTG
CGGGCGCTCG GGCGCGTACC GGGTTGCCGG CCGGCGGAAG CCGGGGCGTT CAGCCGCCGC
GCCTTCCTCA ACGGCCGCAT CGACCTGACC GAGGCGGAGG GCATCGCCGA CCTCATCGAC
GCCGAGACCG AAGCGCAGCG TGTCCAGGCC CTGCGTCAGA TCGACGGCGC CCTCGGCCGC
CAAGTCGCGG CATGGCGCGA GACCGGCATC GATCTGCTCG CCGGAGCGGA AGCGGCCCTC
GATTTTGCCG ATGAAGGCGA TGTCGATGAG GCCGGCCTCG ACGCTGCCCT GTCCGGCCGC
GCCGCATTCT TGCGTGATGC GATCCGAGCC GCGCTGGCCG ACGGACGCCG GGGCGAGCGC
CTGCGCGAGG GGTTCTGCGT CGTGCTGGCG GGTGCTCCCA ATGCCGGAAA ATCGACCCTG
CTCAATGCGC TGACCGGGCG CGACGCGGCC ATCGTCTCCG ACATTCCCGG CACGACCCGC
GATGCCATCG AGGTGCGCTG CGATCTCGGC GGGCTACCGG TCGTGCTGGT CGATACCGCA
GGCCTGCGCG ATACGGCGGA TGCGATCGAG GCGGAGGGCG TCAAGCGCAC GCAAAGCCGG
ATCCGCGGCG CCGACCTCGT GCTCCATCTC GTGCCGGCGG ACGGCGAGAC CGACGCGGGG
CGCTTTGCGG ACGTCCCCCT CCTTCTCGTT CGCACGAAAA CCGACCTCGC GCCGGAGGTG
CCGGGGGAGG GCGGCCTCGC CATCTCGGCC GTCACGGGGG CCGGACTCGA CGCGCTGTTG
GATGCCATCC AGGCCGCGGC CCAAACGGCC CTCGGTCAGG GCGATGCCCT CGTCACCCGT
GAGCGTCATC GCGAGGCTTT GTCCCGGGCT GCGGCGCATC TCGACCGTGT CGCCACCGCA
TCGGCCGGTT TCCCGCCCGA ACTGGTGGCG GAGGACCTCC GGCTCGCCGT CCGGGCGCTG
GGCGAGGTCG GGGGGCATGT CGGCGTCGAG GAGATGCTGG ACCGTCTCTT CGCCGGCTTC
TGCATCGGCA AATAA
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| Protein sequence | MSPPLPDRDD TIFAPASGFG RAAVTVVRIS GPAAGLTLDR LAGGRPEPRR LSLRCLRDPE
SRDILDQALV AWLPGPATAT GEDMAELHLH GGLAVRSAVL RALGRVPGCR PAEAGAFSRR
AFLNGRIDLT EAEGIADLID AETEAQRVQA LRQIDGALGR QVAAWRETGI DLLAGAEAAL
DFADEGDVDE AGLDAALSGR AAFLRDAIRA ALADGRRGER LREGFCVVLA GAPNAGKSTL
LNALTGRDAA IVSDIPGTTR DAIEVRCDLG GLPVVLVDTA GLRDTADAIE AEGVKRTQSR
IRGADLVLHL VPADGETDAG RFADVPLLLV RTKTDLAPEV PGEGGLAISA VTGAGLDALL
DAIQAAAQTA LGQGDALVTR ERHREALSRA AAHLDRVATA SAGFPPELVA EDLRLAVRAL
GEVGGHVGVE EMLDRLFAGF CIGK
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