| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1455 |
|---|
| Symbol | |
|---|
| ID | 5835790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 1626941 |
|---|
| End bp | 1630219 |
|---|
| Gene Length | 3279 bp |
|---|
| Protein Length | 1092 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641367255 |
|---|
| Product | PAS sensor protein |
|---|
| Protein accession | YP_001638927 |
|---|
| Protein GI | 163850884 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.534076 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.193101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACT TACCTCCGTT CCTGGCCGGC GGCGGCGAGG CCGCCCGCAT GATCGCCGAG
CGCGACTGGT CGGATCATCC CCTCGGGCCG CCGCAAACCT GGCCGGAATC GCTGCGCACC
GCGCTCAGCC TCGTGCTGAA CTCGCCCGAG AGCATGATCC TGGCCTGGGG GCCGGAGCTG
CACTTCTTCT TCAACGACAC CTACTTCCCG CTGCTGGGGC CCCGCCTCCC CTGGGCCATG
GGCGAGCGCT TCGACCGGGT CTGGGCCGAT GCCTGGGATC AGGCCAAGCC GATCATCGAC
GACGCCTTCG CCGGCAAGAG CCGCCGCTTC GAGGATCTGC CCTGGACGCT CGCCACCGAC
CGGGGCGAGG CGCAGACGTG GTGGAGCTTC TCCTACTCGC GGGTGCTCGA CGGGGAGGGC
CGCATCGCCG GCCTGTTCGT CTTCACCAAC GAGACGACGA AGCGCATCCG CATGGAGGCG
CTCCAGCGGG AGAGCGAGGC GGCCCTGCGC CGCAGCGAAT CCTTCCTCGC GGCGACCCTG
CAAGGGCTGC CGGTCGGCGT GATCATCGCC GACGCGGAGG GGCGGATCGT CCACGACAAC
GCCGCCAACC GCGAGATCTG GGGCATGCCG CCGCAGACCG TGAATTGGGA AAGCTACGGC
GACTGGGTCG GCTACTGGCC GGAGACGGGC GAGCGCCTGC GCGCCGAGGA ATGGGGCATG
GCCCGCGCCC TGCTGCACGG CGAGACCGTG CGCGGCGAAC TCGTCGAGAT CGAGCGCTTC
GACGGCGGCG GGCGGCGCCT GTTCCTGAAC AACGCCGCAC CGATCCGCGA TCGCGCGGGC
GCCATCGTCG GCGGCGTGGT GGCCGAACTC GACGTGACCG AGCGGATCGA GGTCGAGCGG
CGGCTGCGGG AGAGCGAGGC GCTCGCCCGC GTCAACGCCG AGCGGGTCCA GCTCGCGCTC
TCGGCCGGCG CGATCGTCGG CACGTGGTTC TGGGATCTGC CCAGCGACCG CTTCACCGTG
GACGAGGGGT TCGCCCGCGC CTTCGGCCTC GATCCGGCGC TCGGCCGCGA GGGCCTGAGC
CTCGCTCAGG TGGTCGAGAC GGTCCATTCC GACGACAAGG CCGGGCTGGC GAAAGCGATC
GGCGAGGCCA TCGCCCGCGG CGGCGCCTAC GCCCACCAGT ACCGGGTGCG GCGGGCGGAC
GGGCGCTATT ACTGGATCGA GGCCAACGGC CGGGTCGATC ACGCGCCCGA CGGCACGCCG
CTCAGCTTTC CCGGCGTGCT CATCGACGTG GAGGAGCGCC GCGCCGTCGC GGCCGAGCGC
GACCGGGCCA CCGCGCTCCT GCGCGAGAAG GCGGTGGAGT TCGAGACCCT GGCCGACAAC
ATCCCGGCCC TGTGCTGGAT GGCCCGGGCC GACGGCCACA TCTACTGGTA CAACCGGCGC
TGGTACGACT ACACCGGCAC CGATGCCGAG AGCATGCAGG GCTGGGGCTG GAAGGCGGTG
CACGATCCCG CCGCGCTGCC GGGCGTAACC GAGCGCTGGC AGCACTCCAT CGCCACCGGC
GAGCGCTTCG ACATGACCTT CCCGCTGCGC GGCCGGGACG GCACGTTCCG CCCCTTCCTG
ACCCGCATTG TACCGATCCG CGACGAGACC GGCACCGTCG TGCGCTGGTT CGGCACCAAC
ACCGATATCA CCGATCTGCG TGCGGTCCAG GATGCCCTGC ACCGGCTCAA CGAGACCCTG
GAGGAGCAGG TTGCCGCCCG CACCGCCGAG CGCGACCAGA TCTGGCAGGC GTCGAGCGAC
CTTCTGGCCG TGGCCGATTT CGAGGGCCGT TTCGTCAGCC TCAACCCGGC CTGGAGCGCC
ACGCTGGGCT GGAGCGAAGC CGAGTTGAAG GCGGTCCCCT TCCTCGACTT CGTCCACCCG
GAGGACCGGG AATTGACGCT CGCGGCCGCC GCCAGCCTCG CCCGCGGCGA GATGCAGCTC
GGTTTCGAGA ACCGCTACCG GACCCGCGAC GGGGATTACC GCTGGTTCTC CTGGAACACC
GTGCCGCGCC AGGGGCTCAT CTACGCCTCG GTGCGCGACG TCACCGCGAT CAAGGGGCAG
GCCCGCGCCC TGGCCGAGGC CGAGGAGGCC CTGCGCCAGT CGCAGAAGAT GGAGGCGGTG
GGCCAGCTCA CCGGTGGCCT CGCCCACGAC TTCAACAACC TGCTCGCCGG CATCTCGGGC
AGCCTGGAGC TGATGCAGAC CCGCATCAGC CAGGGCCGGC TCAAGGATGT CGACCGCTAC
ATGGGCGCCG CCCAAGGCGC GGCCAAGCGC GCTGCCGCGC TGACCCACCG CCTGCTCGCC
TTCTCCCGCC GCCAGACGCT GGACCCGCGG CCCACCGACG TGAACCGGCT GGTGATGGGC
ATGGAGGATC TGATCCGGCG CACGGTCGGT CCCACCATCA CCATCGAGGT GGTGGGGGCG
GCCGGGCTCT GGCCCTCCCT CGTCGATCCG CCGCAGCTCG AGAATGCGCT GCTCAACCTC
TGCATCAACG CCCGCGACGC GATGCCCGAG GGCGGGCGCA TCACCATCGA GACCGCCAAC
AAGTGGCTCG ATGCCCATGC CGCGCACCAG CACGACGTTC CGCCGGGCCA GTACCTCTCG
CTGTGCGTGA CCGATACTGG CACCGGCATG AGCCCGGACG TGCGGGCCAA GGCGTTCGAC
CCGTTCTTCA CGACCAAGCC GACCGGCCAG GGCACAGGCC TCGGTCTGTC GATGATCTAC
GGCTTCGCCA AGCAGACGGG CGGGCAGGTG CGGATCTATT CCGAACTCGG CCAGGGCACG
ACGGTCTGCA TCTACCTGCC CCGCTTCCAC GGCGAGGCGG AGGATCTCGA TTCGCTCGGC
CCCCTGGTCG ATGCGCCGCG CGCCGAGCAG GGTGAGACGG TGCTCGTGGT CGATGACGAA
CCGACCGTGC GGATGCTGGT GACGGAGGTG CTGGAAGACC TCGGCTATAC CGCGATCGAG
GCCGCCGACA GCGCCAGCGG CCTCAAGGTG CTGCAATCGG ACGTGCGCAT CGACCTGCTC
ATCTCCGATG TCGGGCTGCC CGGCGGCATG AACGGCCGCC AGATGGCCGA TGCGGGCCGT
CTCTCGCGCC CCGGTCTCAA GGTGCTGTTC ATCACCGGCT ATGCCGAGAA CGCGGCGGTG
GGCAACGGCC ACTTGGAGCC CGGCATGGCG GTGCTGACCA AGCCGTTCGT GGTCGAGACC
CTGGGCCTGC GCATCCGCGA GATCATCGCG CGGGGGTAG
|
|---|
| Protein sequence | MTDLPPFLAG GGEAARMIAE RDWSDHPLGP PQTWPESLRT ALSLVLNSPE SMILAWGPEL
HFFFNDTYFP LLGPRLPWAM GERFDRVWAD AWDQAKPIID DAFAGKSRRF EDLPWTLATD
RGEAQTWWSF SYSRVLDGEG RIAGLFVFTN ETTKRIRMEA LQRESEAALR RSESFLAATL
QGLPVGVIIA DAEGRIVHDN AANREIWGMP PQTVNWESYG DWVGYWPETG ERLRAEEWGM
ARALLHGETV RGELVEIERF DGGGRRLFLN NAAPIRDRAG AIVGGVVAEL DVTERIEVER
RLRESEALAR VNAERVQLAL SAGAIVGTWF WDLPSDRFTV DEGFARAFGL DPALGREGLS
LAQVVETVHS DDKAGLAKAI GEAIARGGAY AHQYRVRRAD GRYYWIEANG RVDHAPDGTP
LSFPGVLIDV EERRAVAAER DRATALLREK AVEFETLADN IPALCWMARA DGHIYWYNRR
WYDYTGTDAE SMQGWGWKAV HDPAALPGVT ERWQHSIATG ERFDMTFPLR GRDGTFRPFL
TRIVPIRDET GTVVRWFGTN TDITDLRAVQ DALHRLNETL EEQVAARTAE RDQIWQASSD
LLAVADFEGR FVSLNPAWSA TLGWSEAELK AVPFLDFVHP EDRELTLAAA ASLARGEMQL
GFENRYRTRD GDYRWFSWNT VPRQGLIYAS VRDVTAIKGQ ARALAEAEEA LRQSQKMEAV
GQLTGGLAHD FNNLLAGISG SLELMQTRIS QGRLKDVDRY MGAAQGAAKR AAALTHRLLA
FSRRQTLDPR PTDVNRLVMG MEDLIRRTVG PTITIEVVGA AGLWPSLVDP PQLENALLNL
CINARDAMPE GGRITIETAN KWLDAHAAHQ HDVPPGQYLS LCVTDTGTGM SPDVRAKAFD
PFFTTKPTGQ GTGLGLSMIY GFAKQTGGQV RIYSELGQGT TVCIYLPRFH GEAEDLDSLG
PLVDAPRAEQ GETVLVVDDE PTVRMLVTEV LEDLGYTAIE AADSASGLKV LQSDVRIDLL
ISDVGLPGGM NGRQMADAGR LSRPGLKVLF ITGYAENAAV GNGHLEPGMA VLTKPFVVET
LGLRIREIIA RG
|
|---|
| |