| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1393 |
|---|
| Symbol | |
|---|
| ID | 5833140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 1562238 |
|---|
| End bp | 1563713 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641367193 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_001638865 |
|---|
| Protein GI | 163850822 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00241156 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGCTT TTCGCACCGG CCTACCGGCC CTGCTTGCCG CCGGACTTGC GACGGGCGCC
CTCGCACAAG GGACCCTCCC ACCGGCCGCG CCGGCCCGGC CGAAGCCAGC CGCTGCCCCC
CAACCCGCGC CCGATCCCGC CTTCGAAGCG GCGCGGACGG CCTTCGAGGC CCTGCCCGAG
GCGGAGCGGC GGGGCCTGCA AGATGCCCTG GTCTGGACCG GTGATTATAA CGGCGTGACG
ACCGGGGCCT TCGGCAAACG CAGCTTCGAG GGCATCCAGA CCTACCAGAC CCGCACGGGC
GCCACCCCGA CCGGCCTTCT CACGCCACCG GAGCGCGCGG CGCTCAAGCG CGAGGCGGAG
GAGGCCCGGC GGGCGGCGCG CTTCAAGGTC CAGCCCGATC CGGCGAGCGG CGTGGTGGTC
GGCGTGCCGG AGGCGCTGCT GCCGAAAAAG AGCGCGATCC CCGGCGGCAC TCGCTGGCAG
AGCACCGACG GGCGGGTGAC CCTCGACACC AAGTCGTTCC CGCAAGGGGA GACCAGCCTC
GACGCCCTGT TCGAGCGCGC CATCGCCGCG ATGCCCGGCC GCAAGGTCAC CTACAAGCTG
AAGAAGCCGG ACTTCATCGT CATCACCGCC GAAACCGCGG GCGGGCGCTC CTATCTCCGC
TACGCCGAAG GCCCCCAGGG CATCCGCGGC TTCACCCTCG GCTACGACAG GGCGCTGGCG
GACACGGTCG ATCGTCTCGT CATCGCGGTG GCCAACAATT TTTCACCGTT TCCCGAGGAC
GCGCCGGCTC CCACCGCTCC GACGGCGGCC ACCGGCCCGA CCCCTCGCAC ACCTGCCTCC
GGCCTGGCGG CCGCGCCCGC CGCACCGCCG CTGCCCGGTG TGCAGGCGGA GGCGCGCCCC
GCCGCGACCG GCCTGCTGCT GGGCGGCGGG CGGGTGCTGA CGGCGGCCTC CGCCCTCGAA
TCCTGCGCCG CGCCGCGCAT CGGCGGTGCG GCGGCCCGGA TCGAGCGGCG CGATGCGGCG
GGCAGTCTTG CGCTTCTGTC CGCCGAGGGG TTGGCGGGCG GTGCGCCGGC GCCGCTCCGC
GCCGAGCCGG TGAGCGAGGG CGAGGCCCTG CTCGTGCTCG GCGCCCAGGC GAAGGGCCGC
CCGAGCGTCG CCCCCGCCAG CGCTGCCGTC GAAGGCGTTT ATGCCCCGCT CCAGCCCGGC
GCCGCTGGTG CGCCGGTGCT CGACCGGTCG GGCCGCCTCG TCGGACTCGT CGCCCGCTTT
CCCACCGCAC CCCGCCTGAT CGCCGGGGTG ATGCCGCCGA CCCGCTATGC CGTCGTACCG
GGAAAGGCCG TCGCGGCGTT CCTGAGCGAG AGCGGCCTGC CCGCCGGAGC GGGCAAGGAC
GGGGCGAAGG ATCTCGCAAA GGGCGCCGCG ACCACGCTGG GCGGGGCGGC GGCGCCCGTT
CTCGACGCCG TCGTTGCCAT CACCTGCGCC CGGTGA
|
|---|
| Protein sequence | MRAFRTGLPA LLAAGLATGA LAQGTLPPAA PARPKPAAAP QPAPDPAFEA ARTAFEALPE
AERRGLQDAL VWTGDYNGVT TGAFGKRSFE GIQTYQTRTG ATPTGLLTPP ERAALKREAE
EARRAARFKV QPDPASGVVV GVPEALLPKK SAIPGGTRWQ STDGRVTLDT KSFPQGETSL
DALFERAIAA MPGRKVTYKL KKPDFIVITA ETAGGRSYLR YAEGPQGIRG FTLGYDRALA
DTVDRLVIAV ANNFSPFPED APAPTAPTAA TGPTPRTPAS GLAAAPAAPP LPGVQAEARP
AATGLLLGGG RVLTAASALE SCAAPRIGGA AARIERRDAA GSLALLSAEG LAGGAPAPLR
AEPVSEGEAL LVLGAQAKGR PSVAPASAAV EGVYAPLQPG AAGAPVLDRS GRLVGLVARF
PTAPRLIAGV MPPTRYAVVP GKAVAAFLSE SGLPAGAGKD GAKDLAKGAA TTLGGAAAPV
LDAVVAITCA R
|
|---|
| |