| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1388 |
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| Symbol | |
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| ID | 5831741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | + |
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| Start bp | 1558097 |
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| End bp | 1559449 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641367188 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001638860 |
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| Protein GI | 163850817 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.352214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000309087 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCACCG CCGCAATCGG CTTCCTCTAT GCCGGGGCGA CCTTGGGGGC GATGCTCTCG
GGTATCCCCA TCGCCTTTGC GCTGGGCTTC GTGGCCCTGG CCTTCATGTA CGTGTTCATG
CCCGCCGCCT CGCTCGATAC GGTGGCGCAG AACGTCTACG AGGAGATGGC CTCGATCACC
CTGCTCTCGA TCCCGCTCTT CATCCTGAAG GGCGCGGCGA TCGGGCGGAG CAAGGCGGGC
CAGGATCTCT ACTCGGCGAT GCATGCCTGG ATGCATCGCA TCCCCGGCGG CTTGGGCATC
GCCAACGTGT TCGCCTGCGC CCTGTTCGCG GCGATGGCCG GCTCCTCGCC CGCCACCTGC
TCGGCGATCG GCTCGGCGGG CATTCCGGAA ATGCGCCGCC GCGGCTACTC GCCGGGCTTC
GCCGCCGGGA TCATCGCGGC GGGCGGCACG CTCGGCATCC TGCTGCCGCC CTCGATCACC
ATGATCCTCT ACGCGGTGGC CGCCGAGCAG TCGCTCGGGC GCCTGTTCCT GGCCGGCATC
GGCCCGGGCT TCCTGCTGGT CGCGCTGTTT GCCAGTTGGT CGGTATTCCG CTTCCGCTCG
GAGTTCGCGG CGGCCAAGCT CGCCTATGAG CGGACGGGTA CGCAGCATCC GATCCTCAAG
GAGGACAGCT ACAGCATGCG CGAGCGTTTC TCGACGCTGC CGCGGGTGCT GCCCTTCGTG
GTGCTGCTCA CCGGCGTCAT GGTCGCGCTC TACGGCGGCT ACGCCACGCC CTCCGAGACG
GCCGGCCTCG GCGGCCTACT GGCGCTGGCG CTGATCGCGG TGATCTACGG CGTGTGGCGC
TTCCGCGATC TCGACCCGAT CCTCACGGCG ACGCTGCGGG AATCGACCAT GCTGATGCTG
ATCATCGGCA TGTCGCTCCT CTACGCCTAT GTGATGAGCT ACCTCCACAT CTCACAGGCG
GCAGCCCAGG CCATCGTCGC GATGCAGCTC TCGCCCTGGG TCCTGCTCGT CACGATCCTG
GCCCTGGTGA TCGCGCTCGG CTTCTTCCTG CCGCCGGTCT CGATCATCCT GATGACGGCA
CCGATCATCC TGCCGCCGCT CAAGGAAGCC GGGTTCGACC TCGTCTGGTT CGGCGTGGTG
ATGACGATCA CCATGGAGAT GGGGCTGATC CACCCGCCGG TGGGCCTCAA CATCTTCGTC
ATCAAGAACA TCGCCCCCGA CATCCCGCTC AAGGACATCA TCTGGGGCAC CCTGCCCTTC
GTGATCCTGA TGGCTGTCGC GATCCTCCTG CTCTGCCTCG TGCCGGGCAT CGCCCTCTGG
CTGCCGGACC TGCTCCTGCC GACGACCCGG TAA
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| Protein sequence | MSTAAIGFLY AGATLGAMLS GIPIAFALGF VALAFMYVFM PAASLDTVAQ NVYEEMASIT
LLSIPLFILK GAAIGRSKAG QDLYSAMHAW MHRIPGGLGI ANVFACALFA AMAGSSPATC
SAIGSAGIPE MRRRGYSPGF AAGIIAAGGT LGILLPPSIT MILYAVAAEQ SLGRLFLAGI
GPGFLLVALF ASWSVFRFRS EFAAAKLAYE RTGTQHPILK EDSYSMRERF STLPRVLPFV
VLLTGVMVAL YGGYATPSET AGLGGLLALA LIAVIYGVWR FRDLDPILTA TLRESTMLML
IIGMSLLYAY VMSYLHISQA AAQAIVAMQL SPWVLLVTIL ALVIALGFFL PPVSIILMTA
PIILPPLKEA GFDLVWFGVV MTITMEMGLI HPPVGLNIFV IKNIAPDIPL KDIIWGTLPF
VILMAVAILL LCLVPGIALW LPDLLLPTTR
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