| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1383 |
|---|
| Symbol | |
|---|
| ID | 5831236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 1551946 |
|---|
| End bp | 1553793 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641367183 |
|---|
| Product | peptidase C14 caspase catalytic subunit p20 |
|---|
| Protein accession | YP_001638855 |
|---|
| Protein GI | 163850812 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.224094 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00154114 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAGTT CATTGCGAAT TCTTTGCGTG CATGGCCTTG GCGATCAGCG TCAAAGCAAC
TGGGACGCAG ATTGGTCGAG TGCGATCAAG CGAGCCGTCG GAACGAGTGC TGGCGTTGAA
TTGGATTTCC GATTTCTGAC CTACGATCCC ATATTCGAAC GCACCGATAT CAGTTTTGCG
GAGACGCTCG GCGCCTTCTG GAAGCTGGCG CGCAGCGGCC TCGGCGGCTT GTTTCGTCAG
CCGCGTGGCC CGGTCAGCAA TATTTCGGAC CGACTCCGCT GGACCGCCGG CTACGTCGTT
GCCTGGGTGG AGGATGAACA GTTCCAGCAA GAGACCCGCG CGCTCGTGCT CGATACGCTG
CGCGACTACA AGCCCGACAT CGTCCTTGCT CATAGCCTCG GCTCTCTCGT CACTTACAAT
GCCTTCTCAC ACGCGGATGC GGGGGAAAGC GAGGCGGCCA AGGCGCTCGC GAGCACACAC
TACGTGACGT TCGGATCGCA GATCGGAAAT CCTTTTGTCC TGGGAAACCT GACATACGGC
CGCGTTCAAC GTCTTGCCGT CAGGCATTGG CACCATCTCT ACAACGAATA CGACGATGTT
TTCACCGCAC CTCTAAAAGT TCAAGGTGTC GACAATTTCA ATCAGCTTCT GACGCCGTTC
GATCTCCCCG GTTTCGGAGA TCATGATGCG GCCGGCTACC TCACGCATGC CGTGACCCAA
ACCTCCTTCT GGACGCCGAT GGTCGACCTC GCAGCCCGTC AATCCAGGGC TGTGGGTCGC
AAAGCGGTGG CGGGCGCCGA TCGTTGGAAT CGCTCGCTTC CGACCGCGGC CCCATCCACG
CGGCGCAAAG CAGTCCTGAT CGGAATCGAC GATTATCCCG ATCCCGCCAA TCGGCTGTCG
GGTTGCGTCA ACGATGTTTT CGCGATGAGC GCGACCTTGC AGGATTGCGG GTTCGAGCCG
GAGCAGATTC GCGTATGCCT GAACGAGCGC GCCACCGCGG ACGGCATCAT CTCTCGGCTC
GAATGGCTGG TCGATGGTGC GCAACCCGGT GACCAGTTGG TGTTCTTCTA CTCCGGGCAC
GGCGCGCGCG TGCCGGAATA CGGCCAACAG GAGGAGCCGG ACCGTCTCAC TGAGACGCTT
GTGCCGTATG ACTTCGACTG GACACCAGAG CACGGCGTGT CCGATGAGCA GATCAACAGT
TTCTACGCGC AACTTCCCTA TGAGACCCAC CTCCTGATGA TTTTCGACTG CTGCCATTCC
GGCAGTATGC ATCGCGATGG CGCCGGTCGC GCACGCGGGA TCACGCCCCC GGACGACATT
CGGCACCGCC AGCTCCGATG GAACCGCGAA GCGGAGATGT GGGTCGAGCG TGACTTCACC
CCGCTCAACA AGGCCTTTTC GAGCCAAGCG GCAAAACGGC AGGCTTTCTT CGGCTCCAAC
CTCGCCACGG TCCGCCTGGG ACGCGCCGCC TTGCTCCGCG TCAACGACCA GAAGAGCTAC
GACCGGGCCA AGAAAGCACG CGGAGCGCCG ATTGGACCGT TCCTCCCCGT CATCATCGAA
GCCTGTGGAG AGGAGCAATA CTCCTACGAG TATCGTCATG GCGCGACCAG CTACGGCGCC
TTCACCTTCT GCCTCACATC CATCCTGCGC AAAGAGAAGA ATATTAGCTT CCAGAAGCTT
GTACAGCTCG CGACTGAGCG TCTGGAACGG CTCGGCTATA ACCAGAAGCC ACAAATCCTG
GGGCCAGCCA TCGACCTCGA TGCGAAGGTG CCGTTCGAGA CAGGGCGAGT CGGTCAGCCG
CCCGCCCGCA ACCTGCCCGG CTCAGCGACG CCGCGAACCT CCGGGTGA
|
|---|
| Protein sequence | MPSSLRILCV HGLGDQRQSN WDADWSSAIK RAVGTSAGVE LDFRFLTYDP IFERTDISFA
ETLGAFWKLA RSGLGGLFRQ PRGPVSNISD RLRWTAGYVV AWVEDEQFQQ ETRALVLDTL
RDYKPDIVLA HSLGSLVTYN AFSHADAGES EAAKALASTH YVTFGSQIGN PFVLGNLTYG
RVQRLAVRHW HHLYNEYDDV FTAPLKVQGV DNFNQLLTPF DLPGFGDHDA AGYLTHAVTQ
TSFWTPMVDL AARQSRAVGR KAVAGADRWN RSLPTAAPST RRKAVLIGID DYPDPANRLS
GCVNDVFAMS ATLQDCGFEP EQIRVCLNER ATADGIISRL EWLVDGAQPG DQLVFFYSGH
GARVPEYGQQ EEPDRLTETL VPYDFDWTPE HGVSDEQINS FYAQLPYETH LLMIFDCCHS
GSMHRDGAGR ARGITPPDDI RHRQLRWNRE AEMWVERDFT PLNKAFSSQA AKRQAFFGSN
LATVRLGRAA LLRVNDQKSY DRAKKARGAP IGPFLPVIIE ACGEEQYSYE YRHGATSYGA
FTFCLTSILR KEKNISFQKL VQLATERLER LGYNQKPQIL GPAIDLDAKV PFETGRVGQP
PARNLPGSAT PRTSG
|
|---|
| |