| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1382 |
|---|
| Symbol | |
|---|
| ID | 5832576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 1549546 |
|---|
| End bp | 1551699 |
|---|
| Gene Length | 2154 bp |
|---|
| Protein Length | 717 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641367182 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001638854 |
|---|
| Protein GI | 163850811 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.530841 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.000808374 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTTCC GTCAACGGGC CGTGCCGCGT GCCGCCCTGC CCTCGACCCT GCTCGTCTCC
GGCCTCGTCC TGTCCGCCCC CGTCCTTGCG CAGGCGCCTC CGGAGAGCGC GACGCTTTCG
GAAATCAGTG TCTCCGGCAC CGCTTCGCCC GCCACCGGGC GCCCCGCCGG CTCGGCCGAG
ACCGCCGGTT CGCTCACCGT GCCGAGCGTG GCCGCGCAGC GGGCGGCGGT GAACGCCACC
GTCGGCTCGG TCGCCTTCGT CGATGCCGCG ACGTTCCAGA ACCGCTACGC CAACACCGTG
CGCGACGTGC TGAAAGACGT GCCCGGCGTG TTCGTGCAGG AGCGCTACGG CCAGGAGATG
CGCCTCTCGA TCCGCGGCTC CGGCATCGCC CGCGGCTTCC ATGTCCGCGG CATCGAACTC
TTGCAGGACG GCATTCCGCT CAACCTCGCC GACGGCAGCG GCGACTTCTA CCAGATCGAT
CCGCTGAGCC TGCGCTCGGC CGAGGTCTAC AAGGGCGGCA ACGCGCTGAC CTTCGGTGCG
ACCACGCTCG GCGGCGCGGT GAACTTCGTG ACGCCGACCG CCTACACGGC GCTCAGCCCG
AACAGCGTTC GGATCGACGG CGGCAGCTTC AACACCATCC GCGAGCACTT CCAGCTCTCG
CGGATCTCGG GGCCGGCCGA TGTCCTGATC TCCGGCACCG CGACCAATTC CGACGGATTC
CGCGATCACG AGACCCAGCG CACCCGCAAC GTGAACGCCA ATCTCGGCTA CCGCCTCGCG
CCGGGTGTCG AGACGCGGTT CTTCCTCGGC TTCTACGACA CCGACCAGAA GCTGCCCGGC
TCGCTCTCGC TGTTCGACGC GCTGAACCAT CCCCGCCTCG CCAACCCGGC GGCCCTTGCC
GGCAACCAAT CGCGAAAAGT GACGACGGAG CGCATCGCCA ACCGCACCTC GTTCGAACTG
GAGGTCGGGC GCCTCGACAT CGATTCCTGG GCGATTCACA AGAGCCTCTA TCACCCGATC
TTCCAGGTGA TCGACCAGGA CGGCTGGACC TACGGCGTCG CCCCGCGCTG GGCCGGCACC
TTCGATCTCG GCGGCTTCCG CAACGACCTG ATCCTCGGCC TGCGGGCGTT CGCCGGCATC
AACGACGCCC GGCAGTTCGT GAACGTGGCG GGGTTCCGCG GCGCCCAGAC GCTCGATGCC
CGCCAGAGCG CCTCGAACTA CGAGGCCTAT GCCGAGAACC GGTTCTGGTT CCGACCCGAC
ATGGCGCTGA TGACCGGCGC CAAGCTGTTC TCCGCGAACC GCACCTTCAG CGACAGGGGC
GGCCTGCCGG CGAGCCCCAC GGCGCGCTTT GCAAATGTCA CCTACGAGGG CATCAACCCG
AAGCTCGGCC TGCTGTGGCA ACCGCTGCCG GAGATTCAGG TGTTTGCCGA CGTCACCCGC
TCGCGCGACG TGCCGGATTT CTCCGACCTC GTGCAGGCGA ACCTGCTCGG CACCACCTTC
GTGCCGCTCG AAGCCCAGCG CGCCTGGACC TACGAGGCGG GCTCACGCGG CCGGATTGAT
CGCCTCGCCT GGGACGTGAC GCTCTACCGG GCGGAAGTCC GCGACGCTCT GATCAACTTC
ACGCCCAATC CGGGCCTGAA CATCCCGGCG GCGACCTTCA ACGCCCCGCG TACCCGCCAC
CAGGGCGTCG AGGCCGCCGT GACCCTCGAT CTCGCCACGG ATCTGACCGG CGTCGGCGAC
CGGCTCGCCG TGACGCAGAT CTGGACCCAT AACGACTTCC GCTTCGTCGG CGACCCGGTC
TTTGGCAACA ACCGCATCGC CGGCGTGCCG GTGAACGTGC TGCGCACGGT GCTCGGCTAC
CGGCATCCGA GCGGCTTCCA TCTCGCCCCG ACCCTCGACT GGGTGCCGCA GGGCGCCTTC
GCCGACCACG CCAACACCCT CAAGGTGCCG GGCTACGCTC TGCTCGGCCT CCAGGCCGGC
ATCGACTTTG CCAACGGCGT CTCGCTGTTC GTGGATGCCC GCAATCTGAC GGACGAACGC
TACGTCTCCG ACATGTCGAC GGTGACCAAC GCCGCGACCG TGGCGGGCGG GCCGGTGGCG
TTCTTTCCGG GCAACGGCCG CAGCGTGTTC GGGGGCGTGC GGGCCTCGTT CTGA
|
|---|
| Protein sequence | MPFRQRAVPR AALPSTLLVS GLVLSAPVLA QAPPESATLS EISVSGTASP ATGRPAGSAE
TAGSLTVPSV AAQRAAVNAT VGSVAFVDAA TFQNRYANTV RDVLKDVPGV FVQERYGQEM
RLSIRGSGIA RGFHVRGIEL LQDGIPLNLA DGSGDFYQID PLSLRSAEVY KGGNALTFGA
TTLGGAVNFV TPTAYTALSP NSVRIDGGSF NTIREHFQLS RISGPADVLI SGTATNSDGF
RDHETQRTRN VNANLGYRLA PGVETRFFLG FYDTDQKLPG SLSLFDALNH PRLANPAALA
GNQSRKVTTE RIANRTSFEL EVGRLDIDSW AIHKSLYHPI FQVIDQDGWT YGVAPRWAGT
FDLGGFRNDL ILGLRAFAGI NDARQFVNVA GFRGAQTLDA RQSASNYEAY AENRFWFRPD
MALMTGAKLF SANRTFSDRG GLPASPTARF ANVTYEGINP KLGLLWQPLP EIQVFADVTR
SRDVPDFSDL VQANLLGTTF VPLEAQRAWT YEAGSRGRID RLAWDVTLYR AEVRDALINF
TPNPGLNIPA ATFNAPRTRH QGVEAAVTLD LATDLTGVGD RLAVTQIWTH NDFRFVGDPV
FGNNRIAGVP VNVLRTVLGY RHPSGFHLAP TLDWVPQGAF ADHANTLKVP GYALLGLQAG
IDFANGVSLF VDARNLTDER YVSDMSTVTN AATVAGGPVA FFPGNGRSVF GGVRASF
|
|---|
| |